Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46860 360 / 3e-128 ATPPA3 pyrophosphorylase 3 (.1) AT1G01050 358 / 1e-127 ATPPA1 pyrophosphorylase 1 (.1) AT4G01480 352 / 7e-125 ATPPA5 pyrophosphorylase 5 (.1) AT2G18230 351 / 1e-124 ATPPA2 pyrophosphorylase 2 (.1) AT3G53620 346 / 1e-122 ATPPA4 pyrophosphorylase 4 (.1) AT5G09650 77 / 8e-17 ATPPA6 pyrophosphorylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041767 [exp] 431 / 4e-156 AT2G46860 359 / 5e-128 pyrophosphorylase 3 (.1) Lus10025999 [exp] 390 / 6e-140 AT1G01050 357 / 5e-127 pyrophosphorylase 1 (.1) Lus10014292 [exp] 387 / 6e-139 AT1G01050 356 / 1e-126 pyrophosphorylase 1 (.1) Lus10024422 [exp] 352 / 9e-125 AT3G53620 385 / 3e-138 pyrophosphorylase 4 (.1) Lus10025311 [exp] 353 / 3e-123 AT3G53620 387 / 1e-136 pyrophosphorylase 4 (.1) Lus10005139 [exp] 347 / 8e-123 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10030179 [exp] 346 / 8e-123 AT1G01050 391 / 1e-140 pyrophosphorylase 1 (.1) Lus10037239 [exp] 77 / 2e-16 AT5G09650 446 / 1e-159 pyrophosphorylase 6 (.1) Lus10035653 [exp] 76 / 2e-16 AT5G09650 446 / 2e-159 pyrophosphorylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022700 [exp] 379 / 7e-136 AT1G01050 353 / 2e-125 pyrophosphorylase 1 (.1) Potri.002G181300 [exp] 360 / 4e-128 AT1G01050 399 / 7e-144 pyrophosphorylase 1 (.1) Potri.014G107100 [exp] 358 / 1e-127 AT1G01050 404 / 1e-145 pyrophosphorylase 1 (.1) Potri.006G082500 [exp] 346 / 1e-122 AT3G53620 392 / 8e-141 pyrophosphorylase 4 (.1) Potri.009G081200 [exp] 77 / 1e-16 AT5G09650 450 / 4e-161 pyrophosphorylase 6 (.1) Potri.001G286900 [exp] 74 / 2e-15 AT5G09650 451 / 2e-161 pyrophosphorylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00719 [flax] [poplar] Pyrophosphatase Inorganic pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10028320 pacid=23166143 polypeptide=Lus10028320 locus=Lus10028320.g ID=Lus10028320.BGIv1.0 annot-version=v1.0 ATGGCCGGCAATGATGGAGAAGCCAGCAGACCCTCACAGCAACCCCGCCCAGCACTCAATGAAAGGATTCTTTCTTCATTGACACGAAGATCTGTTGCGG CGCATCCGTGGCATGATTTGGAGATTGGACCTGGGGCTCCATCTGTATTCAATGTTGTTGTTGAAATTAGTAAAGGTAGCAAAGTTAAGTATGAGCTTGA CAAGAAATCTGGCCTCATAAAGGTTGACCGTGTTCTGTACTCATCAGTAGTGTACCCGCATAACTATGGTTTTATTCCGAGAACTATCTGTGAGGATAGT GATCCTATGGACGTCCTGATACTGATGCAGGAACCTGTCTTACCTGGTTCTTTCCTTCGTGCTCGTGCCATAGGATTAATGCCTATGATTGACCAGGGTG AGAAGGATGACAAAATCATAGCAGTGTGTGCTGATGATCCAGAGTTCCGACATTACACGGACATCAAGCAGCTTGCTCCCCATCGCTTGGCTGAAATCCG CCGCTTTTTTGAGGACTATAAGAAGAATGAGAACAAGAAAGTTGATGTGGAAGACTTCTTACCACCTCAGGCTGCCATTGATGCGATTGAGCATTCCATG GACCTCTATGCATTGTACATTGTCGAGAGCCTGAGGCAGTAA
AA sequence Show only first row Show all	>Lus10028320 pacid=23166143 polypeptide=Lus10028320 locus=Lus10028320.g ID=Lus10028320.BGIv1.0 annot-version=v1.0 MAGNDGEASRPSQQPRPALNERILSSLTRRSVAAHPWHDLEIGPGAPSVFNVVVEISKGSKVKYELDKKSGLIKVDRVLYSSVVYPHNYGFIPRTICEDS DPMDVLILMQEPVLPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYTDIKQLAPHRLAEIRRFFEDYKKNENKKVDVEDFLPPQAAIDAIEHSM DLYALYIVESLRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10028320 [exp]	0	1
AT3G28410			F-box/RNI-like superfamily pro...		Lus10020748 [exp]	9.3	0.7934
AT3G55310			NAD(P)-binding Rossmann-fold s...		Lus10006695 [exp]	9.8	0.7857
					Lus10008694 [exp]	18.0	0.7852
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032271 [exp]	23.0	0.7556
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10005651 [exp]	34.0	0.7103
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	35.0	0.7238
AT2G36570			Leucine-rich repeat protein ki...		Lus10018255 [exp]	36.2	0.7436
					Lus10008695 [exp]	37.1	0.7605
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	97.3	0.7092
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10043357 [exp]	101.5	0.7354

Compare expression of checked genes

Lus10028320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.