Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36520 120 / 7e-27 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 113 / 7e-25 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT4G12770 94 / 7e-19 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 92 / 2e-18 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 78 / 2e-14 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 51 / 5e-06 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041769 [exp] 1493 / 0 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10012302 [exp] 110 / 7e-24 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10010642 [exp] 103 / 6e-22 AT1G75310 261 / 8e-71 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 103 / 7e-22 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10033205 [exp] 103 / 1e-21 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 102 / 2e-21 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10016079 [exp] 94 / 5e-19 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012303 [exp] 94 / 6e-19 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016078 [exp] 94 / 1e-18 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120700 [exp] 294 / 9e-81 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 276 / 3e-75 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 117 / 4e-26 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G197600 [exp] 115 / 1e-25 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G217200 [exp] 115 / 1e-25 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G033800 [exp] 111 / 3e-24 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G079200 [exp] 87 / 3e-17 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 70 / 1e-11 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G134300 [exp] 48 / 6e-05 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.014G042600 [exp] 48 / 6e-05 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028322 pacid=23165956 polypeptide=Lus10028322 locus=Lus10028322.g ID=Lus10028322.BGIv1.0 annot-version=v1.0 ATGGCACCACAACTACCACCGCCAACTTTGCCTCCGCTTCTTCCATTTCTATGTACGACGACGTCTTCGGCGGCCCGCCCAAGTTCGGAGCTTCAGCTCA TCATAACACCGCCGCCACGACGCTCTCTCCCCCTCCCCCCTCTTTCGCCCGCCTCGCCTCGCCCGGATGATTACGCCGAGATATTCGGCTCCTTCCATGC CCCACGCGCCTCCTCGATTCCCGTGCTCGATCTTCCTTCACTGGACGGCGAGGCGGAGGTGTTCTTCGATGTTCGGAGCTCCAGTTTCGACTACCGGGAG GTTTTCGGCGGGGTTCGTTGCCCACGCTACGCTGTCCCCTACGACGAGCTGGTCCGGGTGGACCGGTCAAGCGGTGGTCCGGTCAAATGGTGGTCGTGGC TGTTCGTCTTCCGACGAGGCTTGCTTGAATGCTGGAGGACCCGTGGTTTGTTCTTGCCAGTGACTGGAATTCTTTCAGGGACTCCTGAAGGTGGTGAATC TCTGTCAGAAGAGTCAGACGATCCTGCAAAAGCTCAGTACATCTCCAATGGTGATTTTTATGAGCCAGCTGATGGTAGCACGGAGTTCAACATATCGTAT CACAAAGCCAGTCAAACAAGCAGCAGAGATATTCCAAATGGGACTACTCACGTAGCTCCGCTGAACAATGCTTTTCATGGCTATTCTGTCAAGGTTCACA AGTCTGGTTTGTCACAACCTGATGAGTATCCAACTCAGCTGGTGACTGATGATGATCATCTGGATATAGACTTTAGTGGAGAAATAATGGACGGCTGGCA TTTCAACAATACTGAAAAAGTGCCGGATGCAAATGGCAGTATGCCTCAAAAGGGTTATAATAGAAACACCTCTCTTCCTGCTCATGAGTTTGTGACAATC AAGGGGCTCAATCTGAAAACCGAGCCATCTCACTTGCCGCCACCTGCTAGACCTCCACCTGCTGCAGATGGCAAAAGAAAGAATTCTGAAAAGTTGAGTC CAAGTCATGAAGTTGCTGCTTCTGAACGCATTGCAAGTGATTACTCTCCACCTTACTTTGATGTAGAGGTCGATGCAAGTTCAGCTGCTGCCGCATCTGC TGCAGCCATGAAAGAGGCAATGGAGAAAGCTCAAGCTAAGCTCAAGAGTGCAAAAGAATCACTGGAGAGAAAGAGAGAGGGTGTTCAAAGGCGTGCTGGA TCGGGGTCCAGAACAGGAAGAAAAGGCAAGGAAGGGAAGGGGAAAACAGCGGATCAAAGAAGGAATGCAGAAGAAGTAAATGTTATTGCCACTGATGAAA AAGAAGAGAATGGAGGTGAATTTTTCACTTTAACAGAAAAGGTCAAGAAGACAACTAATCCAGTTTCTGATTCAGTACAAAGGGAAAGGGGTACTGTTTC TCCCAAAACTGTTGGGAAGTACGATAGAGAATCAGTATCGTCTCAAGGGTCTGATGCGATATATGAAGCTGGTGAATGGAAAGAAGCTGGACAATTTTTC GAATTGGTCGGAGAAAAATCTGACCAGCCGTCTGAAGAAGCAAACAACGAAAACATTCCCCATCAGAACATAAGTATCAATGGGCATGAACATAAGGGGA AAAAGGTGGTTACTGAGGTATTGGAGCATCAGTATGACCGGAAAGTGAAACAAGCAGAGTCGGATTCAGGGCTTGACAACTGTGGGTTAAAATTGGATTT GTCAGAAGAATTAATTGGACAAAAAGAACTTCAAAGGACTCAGGAGGCATCCAGACGTGAAGATAATGACAAGAGATCTAGAAAGCATTGGCAACGGCCA GTAGAAGCTGAAAAGAAACACGCCAGAGGTGATGGATTTCTGATGCATGATAATGTAGTAGAGCTTCATCCAACCAAAAATGCTTTAGAGTCAAAACAGG CTTTGAAACATAGTAAAGAGGAGTTGCTACCAAAATGGGCTGGTAAGATCTTGGAAGAGGAGAAGGAAGAACATGTTCAGCATCTGGAAGAGGAGAAAAG CGTAAAAGAGTTACTTGAGCGGGGGGAAAATGAGAAGAAACAGAAAGAGGTTCAGGAAAGGGAGAACAATGAGAGAAAACGAAGAGAGGCTCTTCAAATG GAGGAAAATGGAAGGAGGTTGAAAGAAGACCTTGAGCGTGAAGAACACGAAAGGACATTACAAGAGGCTGCAGAGCGGGAGAAAAATGAAAGGAAATTGA GAGAGGCTATTCGGTTGGAAGAAAGTGAAAGGAGAAGGAAAGAGACTCTCGAGATGGAAGAAATAAAGAGGCGAGAAGCCAAGGAAATTGAACAGGCAGA GAATGACAAGAGACAACGAGAGGCTACTGAACTGGCAGAGAATGAGAAGAGGGAAAGAGAAGCTCGTCAGAGAGAGGAAAATGAAAAACGTCAGAGAGAG GCTTTTGAGATGGAGGAAGAGAAGGAGAGGAGATCAAGAGACGAGGCTTCCAAATCTGGTGATAATGAGAATGTACAAAATGGAGATTTGGAGAGAGATG GAACCGATGCAAAGATTAACGCTACGTTTGAACTGGAAGAAAGTGTGAAGTGTGGAGTTGAAGAAGTAGTTGAACAGGTTGTGGATGAAAGAAGTGAAGA GTTATATAATGTAGAAGGGTTACAAAATCTTAAAGAGAAAGAGGGGCAAACAAACACCAGCAAGCCTCGTGAAGTAGAAGAGAGCAAAACATCAGCATGC CAGACCGAAGAACCTTCAGGCATCTTGCGGGAATCTCTTGAGTGTGAAGAGATGTTTGTGAAAGATGAAGAGTTTGATGATGGTGGACCGGAGAAGGGAC AAAATGAGGCAGGGGAGCCTCAGAAAGAATCTTATCAGGATCTTGATGAGGATGAGAATAAGAAGCTTGAAGAAGCAGAGGTTGGCTCTGAAAATTCAGA AGCACTTGGTAATGAAGAAAATGAGGAGGCACCTTGTAATTCAGGACTCGGTGAGAAATTAGCTGCCGAACCAGTTGATGTGGTTGTTGATGGTAGACCA GAAGTCTATGCTGCGAAATGCAATGTGCAACCTGAAAAGTGCCACATCCTAAACACAGGTCGATCAGAATTTCCATCTGGAGGCAACGATATGAAGAGAG AAGCTCAACATGATAAACAAGCTGCGGGTGAAGATATTAAGAGTGCCTCTTCTTTGGCCGGGGAGAAGTTTGCAAATGACAAGGTGGAAGAACGGAGGAA CATGAATAAAGAAGAGAATAGAAATGATGATATATCCGCTAAAGTAGTAAAAGAGTCTATGGAAGCTGGAAGGAAAATAGAAGCCACTAATCCGGTTGCC CCAGAAGAAGTAAAACGAAGCACCAATAGAACAGCTCTGCGAACTGATGCAAGTGAGACCATGCAAAGCAAAACAAAGAAGCTTAACCAATCTCTTCCAC CGGAAGGTGTAGAATCTGCAAGGTTAAAAAGGGAGAAAGATATTGAAATGGAACGTCTAAGAAAGATGGAAGAAGAGTGGGAGAGGGAAAGGGAAAGAGA GAAGGATAGGATGGCCGTCGACAGAGCAATACTTGAATCTCGGGAAAAAGCCGACCGGGCTGCGGCAGAGAGGGCAATGAAGGAGGCCCGAGAAAGGTTG GAGAAAGCTTGTGCTGAAGCTAGAGGGAAACCATTATCTGACAAAACATCAGATTCAAAGCTCAGAGCTGAGCGTGCAGCAGTTGAAAAGGCAAATGCAG AAGCTCGGGAACGTGCTTTTGAAAGAGCAAGGGCTGAGAGACTGTCTGCTTATGGTAACAATGGGCTGAGGCAATGTTCTTCTTTCTCTGATGTAAAAGA TCCACAGTTCCAGAATACAAGCTCCGCTAATGGGTTCAGAAAGACGTATTCCTCTGTTCACAGTGGTACCTATAACGGGGCGAGATCTGAATCAGTTGAG GGCGAAACGGCTGAAAGGTGTAAAGCTAGATCAGAGCGATACAGGAGAACAGCTGAACGAGCAGCAAAAGCGTTGGCTGAGAAGAACATGCGTGATGTTC TGGCTCAAAGAGAACAAGCTGAGAGAAATGTAATGAATCATCTTCCAGATAGGTTAGCTGAAAGCCTGGATGCCGAGATTAAGAGGTGGTCAAGCGGAAA GGAAGGGAATTTGCGCGCCTTGCTTTCAACCTTGCAATATATCCTGGGGCTGCAAGCATTCATCAAAAGTACATATGCGAGAAGGTGTTCGATCTCCTCA AGGTGCAGCAACATTGGAAGCTTGGAGCAGATTCAATTCAGGGGAGAGGTAGAGCCGCAAGGTAGCGTAGGCCTCAAGGTTGAAAGTATGTCTCGTTATC TTTCATGGGAGAGGAAGTTGTGCCGCTTTGGCCTTTCCGTCAAACACTACCACGGCCGCCGTATCTCCCTTAACCCTACCACAAACAACGCCACCCACAC CGCCTCCATGATCCCCCTCTCCGATCAAAACTCACTTGCTCATGACATCTTAGATACCACCAACCACCCCGTCAACGCCCGCACTGCCTCGGCTAGCCCT TCCACCGGTTAG
AA sequence Show only first row Show all	>Lus10028322 pacid=23165956 polypeptide=Lus10028322 locus=Lus10028322.g ID=Lus10028322.BGIv1.0 annot-version=v1.0 MAPQLPPPTLPPLLPFLCTTTSSAARPSSELQLIITPPPRRSLPLPPLSPASPRPDDYAEIFGSFHAPRASSIPVLDLPSLDGEAEVFFDVRSSSFDYRE VFGGVRCPRYAVPYDELVRVDRSSGGPVKWWSWLFVFRRGLLECWRTRGLFLPVTGILSGTPEGGESLSEESDDPAKAQYISNGDFYEPADGSTEFNISY HKASQTSSRDIPNGTTHVAPLNNAFHGYSVKVHKSGLSQPDEYPTQLVTDDDHLDIDFSGEIMDGWHFNNTEKVPDANGSMPQKGYNRNTSLPAHEFVTI KGLNLKTEPSHLPPPARPPPAADGKRKNSEKLSPSHEVAASERIASDYSPPYFDVEVDASSAAAASAAAMKEAMEKAQAKLKSAKESLERKREGVQRRAG SGSRTGRKGKEGKGKTADQRRNAEEVNVIATDEKEENGGEFFTLTEKVKKTTNPVSDSVQRERGTVSPKTVGKYDRESVSSQGSDAIYEAGEWKEAGQFF ELVGEKSDQPSEEANNENIPHQNISINGHEHKGKKVVTEVLEHQYDRKVKQAESDSGLDNCGLKLDLSEELIGQKELQRTQEASRREDNDKRSRKHWQRP VEAEKKHARGDGFLMHDNVVELHPTKNALESKQALKHSKEELLPKWAGKILEEEKEEHVQHLEEEKSVKELLERGENEKKQKEVQERENNERKRREALQM EENGRRLKEDLEREEHERTLQEAAEREKNERKLREAIRLEESERRRKETLEMEEIKRREAKEIEQAENDKRQREATELAENEKREREARQREENEKRQRE AFEMEEEKERRSRDEASKSGDNENVQNGDLERDGTDAKINATFELEESVKCGVEEVVEQVVDERSEELYNVEGLQNLKEKEGQTNTSKPREVEESKTSAC QTEEPSGILRESLECEEMFVKDEEFDDGGPEKGQNEAGEPQKESYQDLDEDENKKLEEAEVGSENSEALGNEENEEAPCNSGLGEKLAAEPVDVVVDGRP EVYAAKCNVQPEKCHILNTGRSEFPSGGNDMKREAQHDKQAAGEDIKSASSLAGEKFANDKVEERRNMNKEENRNDDISAKVVKESMEAGRKIEATNPVA PEEVKRSTNRTALRTDASETMQSKTKKLNQSLPPEGVESARLKREKDIEMERLRKMEEEWEREREREKDRMAVDRAILESREKADRAAAERAMKEARERL EKACAEARGKPLSDKTSDSKLRAERAAVEKANAEARERAFERARAERLSAYGNNGLRQCSSFSDVKDPQFQNTSSANGFRKTYSSVHSGTYNGARSESVE GETAERCKARSERYRRTAERAAKALAEKNMRDVLAQREQAERNVMNHLPDRLAESLDAEIKRWSSGKEGNLRALLSTLQYILGLQAFIKSTYARRCSISS RCSNIGSLEQIQFRGEVEPQGSVGLKVESMSRYLSWERKLCRFGLSVKHYHGRRISLNPTTNNATHTASMIPLSDQNSLAHDILDTTNHPVNARTASASP STG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10028322 [exp]	0	1
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10041769 [exp]	1.0	0.8979
AT5G59350			unknown protein		Lus10005455 [exp]	8.5	0.7307
AT1G16520			unknown protein		Lus10031771 [exp]	12.0	0.7516
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	13.1	0.7916
AT1G54460			TPX2 (targeting protein for Xk...		Lus10006563 [exp]	17.3	0.7299
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10036627 [exp]	19.4	0.6800
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	19.7	0.7734
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10023579 [exp]	22.8	0.6983
AT5G41620			unknown protein		Lus10017543 [exp]	25.1	0.6737
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	27.3	0.7403

Compare expression of checked genes

Lus10028322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.