Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66500 185 / 1e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 143 / 5e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 142 / 8e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 139 / 8e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 135 / 1e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28690 134 / 2e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G24000 134 / 5e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 134 / 6e-36 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 132 / 2e-35 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33760 131 / 2e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041770 [exp] 354 / 1e-120 AT5G66500 510 / 6e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037362 [exp] 142 / 4e-39 AT3G57430 477 / 9e-158 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 143 / 5e-39 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10015308 [exp] 141 / 5e-39 AT1G28690 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025420 [exp] 141 / 2e-38 AT1G28690 634 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025490 [exp] 137 / 2e-37 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 136 / 6e-37 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 134 / 9e-37 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10008136 [exp] 135 / 1e-36 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022500 [exp] 247 / 2e-79 AT5G66500 582 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G054000 [exp] 146 / 8e-41 AT1G28690 672 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 146 / 1e-40 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 142 / 1e-38 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 140 / 4e-38 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G043400 [exp] 132 / 8e-36 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 132 / 2e-35 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G005700 [exp] 130 / 1e-34 AT3G49142 912 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 130 / 1e-34 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G322100 [exp] 129 / 2e-34 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028323 pacid=23166108 polypeptide=Lus10028323 locus=Lus10028323.g ID=Lus10028323.BGIv1.0 annot-version=v1.0 ATGTTGGCCTCACTAGCATTCTTACTGCTTGTTCCGATCTCTGATCTTCGGACCGGGATGCAGGTTCACTGTGTAGCAATTCGTTACGGGTTTATTTCAC AGACTCAATTGTGCAATGCATTGTTAGATATGTATGCCAAATGCGGCCGAATTTCAAAAGGTAGGTCAGTATTTGATAAGATCATTAGCAAAGATGTTGT CTCTTGGACTACCATGATTGATGCATATGGAAAGCATGGCTACGGACTCGAAGCTCTCGAGTTGTTCAAAAAAATGGGAGAAGAAGAAGTAAATACGGTG TCGCCAAATTCTGTAACTTTCCTTGCTATTCTATCAGCTTGTGGACATGCAGGGCTGGCAGGATGGATAGAAGATGCTTGGTCCTTGTACGATGATATGA TTGAGCATGGAATTAGGCCTACAAGTGCAATCTGGGCTTCACTACTGAACGTTTGTAATCTCAACGAAGACGCTTCAAGAGGTGAGTTTGCAGCCAAGAA TCTCTTGGCGTTGGAACTGAACAATCCCGGGATCAATGTGCTACTTTCGAATTTCTTTGCATCCATTGGGAGATGGGATGCTGTTGATAGCCTGAGAAGC AACATGATGGATAAAGGCCTGTCGAAAGAGTCCGGAAGTAGTCGAGTCAGCCACCACATGTTTACAAGTTGA
AA sequence Show only first row Show all	>Lus10028323 pacid=23166108 polypeptide=Lus10028323 locus=Lus10028323.g ID=Lus10028323.BGIv1.0 annot-version=v1.0 MLASLAFLLLVPISDLRTGMQVHCVAIRYGFISQTQLCNALLDMYAKCGRISKGRSVFDKIISKDVVSWTTMIDAYGKHGYGLEALELFKKMGEEEVNTV SPNSVTFLAILSACGHAGLAGWIEDAWSLYDDMIEHGIRPTSAIWASLLNVCNLNEDASRGEFAAKNLLALELNNPGINVLLSNFFASIGRWDAVDSLRS NMMDKGLSKESGSSRVSHHMFTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10028323 [exp]	0	1
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10035114 [exp]	7.5	0.5952
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10013013 [exp]	35.5	0.5266
AT4G27460			Cystathionine beta-synthase (C...		Lus10025651 [exp]	37.3	0.5667
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011745 [exp]	73.2	0.5130
AT5G58820			Subtilisin-like serine endopep...		Lus10002245 [exp]	80.8	0.5068
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	102.6	0.5128
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10040146 [exp]	114.9	0.5017
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10033047 [exp]	124.6	0.4866
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	134.6	0.5047
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020586 [exp]	143.5	0.4810

Compare expression of checked genes

Lus10028323 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.