Plant FIBer expression Database

Lus10028324 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G18210 81 / 1e-20 unknown protein
AT4G36500 75 / 1e-18 unknown protein
AT3G50900 74 / 4e-18 unknown protein
AT5G66490 64 / 3e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041771
[exp]
191 / 2e-64 AT2G18210 88 / 1e-23 unknown protein
Lus10025997
[exp]
124 / 7e-38 AT4G36500 73 / 1e-17 unknown protein
Lus10025998
[exp]
122 / 3e-37 AT2G18210 72 / 3e-17 unknown protein
Lus10014291
[exp]
120 / 2e-36 AT4G36500 71 / 7e-17 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G022300
[exp]
94 / 4e-26 AT3G50900 84 / 3e-22 unknown protein
Potri.007G022200
[exp]
72 / 5e-17 AT2G18210 56 / 8e-11 unknown protein
PFAM info
Representative CDS sequence
>Lus10028324 pacid=23165973 polypeptide=Lus10028324 locus=Lus10028324.g ID=Lus10028324.BGIv1.0 annot-version=v1.0
ATGTTGAGAGCATTGAGCACTCGCAGGAGCCATAGCAAGTATGAGAAGCTAGTGGACGATTCCTCTGTGGGTCTTCTGGGAGGTGAGCTTAGAAGGAGCA
ACACCTTACCCGTTCAATATCTTGGATCATCAGGAGGGGGGCATAAGCTAGCTAATTTGGAGGTGAAGCTACCAGCTTTGCCGCCGCCGGTGAAACCGGC
CAAGAAGAGTAGCAAAACCCACCCTCTTTTCAGCTTCTTCGATACTCGCCGGAAGAAGAGGACGACGTCAAGGCCGGAGTTCGCAAGGTATATTGAGTAT
GTGAAGGAAGGTGGAAGGTGGGACAAGAGTTCCGGCATGCCTGTAATATACTAG
AA sequence
>Lus10028324 pacid=23165973 polypeptide=Lus10028324 locus=Lus10028324.g ID=Lus10028324.BGIv1.0 annot-version=v1.0
MLRALSTRRSHSKYEKLVDDSSVGLLGGELRRSNTLPVQYLGSSGGGHKLANLEVKLPALPPPVKPAKKSSKTHPLFSFFDTRRKKRTTSRPEFARYIEY
VKEGGRWDKSSGMPVIY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G18210 unknown protein Lus10028324
[exp]
0 1
AT4G02340 alpha/beta-Hydrolases superfam... Lus10001210
[exp]
1.0 0.9896
AT5G13080 WRKY ATWRKY75, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Lus10003128
[exp]
2.0 0.9802
AT5G40010 ASD, AATP1 ATPase-in-Seed-Development, AA... Lus10014498
[exp]
2.8 0.9762
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Lus10002379
[exp]
3.5 0.9774
AT1G05000 AtPFA-DSP1 plant and fungi atypical dual-... Lus10035333
[exp]
3.9 0.9711
AT5G45860 RCAR5, PYL11 regulatory components of ABA r... Lus10003187
[exp]
6.5 0.9787
AT3G07310 Protein of unknown function (D... Lus10003162
[exp]
7.2 0.9545
AT3G48410 alpha/beta-Hydrolases superfam... Lus10022722
[exp]
7.3 0.9620
AT1G11300 protein serine/threonine kinas... Lus10023391
[exp]
7.5 0.9786
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Lus10035241
[exp]
9.8 0.9708

Lus10028324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.