Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50910 273 / 8e-87 unknown protein AT5G66480 201 / 4e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041772 [exp] 762 / 0 AT3G50910 313 / 3e-102 unknown protein Lus10014290 [exp] 566 / 0 AT3G50910 313 / 2e-102 unknown protein Lus10025996 [exp] 560 / 0 AT3G50910 302 / 3e-98 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G022100 [exp] 376 / 3e-126 AT3G50910 240 / 5e-74 unknown protein Potri.005G120600 [exp] 353 / 2e-117 AT3G50910 230 / 6e-70 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028325 pacid=23166072 polypeptide=Lus10028325 locus=Lus10028325.g ID=Lus10028325.BGIv1.0 annot-version=v1.0 ATGAGTGTCTATCGAGCCATGCCTACATTCAGCGTTGTAACGTTGGACAGGTTGTTAGAACCTGGAGCTTCTAAATCTGCTGACAAGTCTGCTCCACCCA GTGTGAATCCAGTTCCAAAGCAGAAGCCTCCATCTCGTTCTACACTGCATAGGAGAAACAGTACCTCAATCACCAACAGGAGTCCTCATCGTCCACAGCT AATCCCATCATTGTACACCACCCCTGAAGCAACTCCTGTCCCTCCTGATTCACCAAAATCTTATACCCCATCACCATACATCATAAATCACAAGCGGAGG GGGCCACGTCTTTCAAAGAGCACTTCTGTAGGCAACCTTGCCTCACCGAAGAAGGAGTTAGATAAGGACGAAGTTGATAGGGAGTCAAAGGTTGTAGAAA CACATGTCAATGTGACTAGGGATCAGCCTGCTGCTCTAGGTCGTCTTGATTTTGACAGAATTGAGCATAAGAATCTAAGTCGTGAAAGCCCCAAGGAGCA GGATCAACCTAATGGCATCCACAGTTTGTCTACAAAAGCAGAGCTTATCAATGGTCACCATGATGGTGCAAAAGTCGGCAGTAATGGAAAAGTTGGAATG TCTGACATGAGGTATGCCTTTCTAAAGGAAAAAGACTGTGCGAGTGCGCGAGATAGTGATACTGAAGACTTCTTTGATCCACGTGATTCAATGAGTCTTT CTAGCACCACTGACGGGGAAGACAATTTTGGAAGTTCTTCTAGGCTAAGTGCTACTACACATATGGCGGAGTTCTTTGATGCTTGGGAAGAACTATCATC TGAAAGTGGATCGCAGTCGGCTCTGCATGATTTCCAAACTGAATTGCGGGAAACAAGATTCAGTTTGCTGATGGAGATAGAGAAGCGTAAGCAAGCAGAG GATGCCTTAAAAAATGTGCAAAGCCAATGGCAGAGAATCATGGAACAACTAGCTCTTGTAGGATTATCTGTTCCTCCTTGTCCCATTGATATAACAGATG ATGACGAGCCAATCAGTGCTGATCCTGCAGAAGAGTTGTCCCAGCAGCTCGATATAATTCGCTTTGTATCCAATTCCATTGGTGGGGGAATTGCAAGAGC TGAGACGGAGGTGGAGATGGAAGCACGGATTGAGGCAAAGAACTTTGAGATCGCACGATTGATGGACCGGCTTCATTATTACGAGGCCGTGAATCACGAG ATGTCACAAAGGAACCAAGAAGCCGTAGGTAAGAAATCTGTGAATGCTGAAATGGGTCGTCGAAATAGGCAGATGCAGAAAAGGAGGCAAAGGTGGGTTT GGGGTTCAGTAGCTGCTGCAATTACTCTTGGCACTACAGCTCTAGCATGGTCTTACCTTCCGTCAAGAGGAGGAACCGCTCCAGCCAGTAGTAGTTCCTC GGAAACTGAGCAGAACAGCACAGCTTCACATTGA
AA sequence Show only first row Show all	>Lus10028325 pacid=23166072 polypeptide=Lus10028325 locus=Lus10028325.g ID=Lus10028325.BGIv1.0 annot-version=v1.0 MSVYRAMPTFSVVTLDRLLEPGASKSADKSAPPSVNPVPKQKPPSRSTLHRRNSTSITNRSPHRPQLIPSLYTTPEATPVPPDSPKSYTPSPYIINHKRR GPRLSKSTSVGNLASPKKELDKDEVDRESKVVETHVNVTRDQPAALGRLDFDRIEHKNLSRESPKEQDQPNGIHSLSTKAELINGHHDGAKVGSNGKVGM SDMRYAFLKEKDCASARDSDTEDFFDPRDSMSLSSTTDGEDNFGSSSRLSATTHMAEFFDAWEELSSESGSQSALHDFQTELRETRFSLLMEIEKRKQAE DALKNVQSQWQRIMEQLALVGLSVPPCPIDITDDDEPISADPAEELSQQLDIIRFVSNSIGGGIARAETEVEMEARIEAKNFEIARLMDRLHYYEAVNHE MSQRNQEAVGKKSVNAEMGRRNRQMQKRRQRWVWGSVAAAITLGTTALAWSYLPSRGGTAPASSSSSETEQNSTASH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50910			unknown protein		Lus10028325 [exp]	0	1
AT5G52430			hydroxyproline-rich glycoprote...		Lus10024642 [exp]	2.0	0.9703
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	4.2	0.9688
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	4.5	0.9725
AT1G80450			VQ motif-containing protein (....		Lus10042423 [exp]	5.5	0.9592
AT5G57510			unknown protein		Lus10028472 [exp]	7.5	0.9684
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	8.4	0.9660
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10027585 [exp]	11.7	0.9410
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10019102 [exp]	12.4	0.9547
AT5G64250			Aldolase-type TIM barrel famil...		Lus10003271 [exp]	14.5	0.9602
AT2G47485			unknown protein		Lus10033571 [exp]	15.0	0.9589

Compare expression of checked genes

Lus10028325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.