Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66450 161 / 1e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT3G50920 150 / 1e-44 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT5G03080 59 / 5e-10 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041773 [exp] 339 / 2e-118 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028328 [exp] 243 / 4e-80 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041774 [exp] 239 / 2e-78 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028327 [exp] 214 / 2e-68 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10026489 [exp] 55 / 1e-08 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021600 [exp] 174 / 5e-53 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.005G120400 [exp] 174 / 5e-53 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.016G086700 [exp] 57 / 1e-09 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.006G130700 [exp] 55 / 6e-09 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10028326 pacid=23166187 polypeptide=Lus10028326 locus=Lus10028326.g ID=Lus10028326.BGIv1.0 annot-version=v1.0 ATGATCGCCCCGGCTCTTCTTCTCTGCAGACCCACCTTTAACTTCTCTTCGCCTCGCCCTCACCGGCCTGCTTCGTCCAGACTCGGCCTGCCTCGACTTG TCCTCTCGGCTGGGAAATCTTCTGACTTTGGTGGGAAATTAACGAGTTCTAGAGAAGAAGATGTACTTTCATCGAACACCTTGCCCGCAGATCAGCTGGC TGGAATTCCCAGGGAGAGTAAAGATAAAACGACGAGATTGACCGAGCAGGAATCTGTTGTCGACGATGATGGACTCGGGGCCAAACTCAATAGTATGAGC AAATGGATTGGATCGGTGGCTATTTGTGTTTTCTATCTATGGAGGCGTGACGGAGAGGGTATGTGGGTGGGTGGTGGTGCAGTGGTTAACTACTTGCTAT CGGTGGCACTGAAATCCATTCTGAATCAAGAAAGGCCAGCGCTTGCTTCTAAATCTGACCCAAGAATGCCATCTTCACATGCACAAACCTTGTTCTACAT TGTCACTTATGCCATCCTCTCAACTTTGAAATGGCAAGGAGAGGATGTGGATCAAGTTTCAGTCATCCTCAGTACCCTTTTCTTCGCAAGTGGCTCCTAT CTGTCATGGCAACGAGTGTCGCAGAAATTCCACACTCCGGGCCAAGTTGTGGTGGGGGCTATAGTAGGGTCAATTTTCTCAAGTCTCTGGTATTGGGTAT GGAGTGAATTTGTGCATCAAGCCTACGTTTCTTCTTTTTGGGTTCGGTTGCCAGTCGTTTTGGGTGGTATTGCATACTTTGTATTCGTAATTGGAACTAT CATTACCTCTCGGCCTGATGATGATAAGATCTAG
AA sequence Show only first row Show all	>Lus10028326 pacid=23166187 polypeptide=Lus10028326 locus=Lus10028326.g ID=Lus10028326.BGIv1.0 annot-version=v1.0 MIAPALLLCRPTFNFSSPRPHRPASSRLGLPRLVLSAGKSSDFGGKLTSSREEDVLSSNTLPADQLAGIPRESKDKTTRLTEQESVVDDDGLGAKLNSMS KWIGSVAICVFYLWRRDGEGMWVGGGAVVNYLLSVALKSILNQERPALASKSDPRMPSSHAQTLFYIVTYAILSTLKWQGEDVDQVSVILSTLFFASGSY LSWQRVSQKFHTPGQVVVGAIVGSIFSSLWYWVWSEFVHQAYVSSFWVRLPVVLGGIAYFVFVIGTIITSRPDDDKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028326 [exp]	0	1
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	6.1	0.7411
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	11.4	0.7257
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	11.7	0.7297
AT4G28100			unknown protein		Lus10039742 [exp]	12.6	0.6937
AT1G73770			unknown protein		Lus10007968 [exp]	14.6	0.6191
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10017654 [exp]	20.5	0.7170
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	21.0	0.7183
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	29.0	0.7236
AT5G63690			Nucleic acid-binding, OB-fold-...		Lus10035799 [exp]	30.4	0.6561
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008510 [exp]	31.3	0.6759

Compare expression of checked genes

Lus10028326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.