Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50920 156 / 1e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT5G66450 153 / 2e-45 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT5G03080 62 / 5e-11 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028328 [exp] 235 / 2e-76 AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028326 [exp] 229 / 2e-74 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041774 [exp] 217 / 3e-69 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10041773 [exp] 166 / 3e-50 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10026489 [exp] 69 / 1e-13 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021600 [exp] 181 / 1e-55 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.005G120400 [exp] 173 / 2e-52 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.016G086700 [exp] 68 / 3e-13 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.006G130700 [exp] 67 / 1e-12 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10028327 pacid=23165994 polypeptide=Lus10028327 locus=Lus10028327.g ID=Lus10028327.BGIv1.0 annot-version=v1.0 ATGACTGTTCTCCACTGCAGATCAACCTTTAATTACTCTTTGCCTCGCCCTCACCAAGCCTCTTTCTCCATACACAGACTACACCTTCAGCTTTACGCTA AAAAGAACCCGGTTGACTTCAACACGAAATCAACAAACAAGAGTAGAGCAGCTGTACCTTCTTCATCCAACAGTACCAAGCCTACAAAGCTGGTCACTTC TGCTGAAATTACTAGTAGTCGTAGCAACGAGGAAACTGTAGCAGTGCTCCAGCCTGAATCTGTTGTGAACGAGTCGCACGAGTTTCGAGGTGTGGCAACC AGGGACAACCATGGACTGGGAGCCAAGCTCAATAGCATGAGCAAATGGGCAGCAGCGGGGGCATTCGGAGCTGTGATTCTATGGAGGCGTGATGGAGAGG CTACGTGGGTAGCTTGTGGTGCAGTCATTAACTTTTTCCTATCTGTAACTCTGAAATCCATAGTGAAGCAAGCGAGGCCACCCTCGTGCACTTGTAGATC CGATCCAGGAACGCCTTCTTCACATGCACAGACCTTATTCTACGTTGTCACTTGTGCCATCCTCGCAACTGTGAAATGGGTAGGAAGGAATGAAGTTTCA ATGATTCTGAGTACACTGTTCCTCGCAAGTGGCTCATATTTAACATGGCAACGAGTATTGCGGAAATTCCACACGGCAGAACAAGTGGCGGTTGGAGCGG TGGTGGGGACAAGTTTTGGAGGTCTGTGGTATTATGGGCTATGGAATGGAATTATGGGCCAGGCCTTCATTTCGTCTGTTTGGGCCCGGGCAGTGGTTCA TTTGGGGGCCTTGTATACTGTGCATGCTTCATTCTGTATTTCGTTAACCACCTGCGTAATGGAGAGGAATGAATACTTATGTATTGGAAATTTGTTCTGA
AA sequence Show only first row Show all	>Lus10028327 pacid=23165994 polypeptide=Lus10028327 locus=Lus10028327.g ID=Lus10028327.BGIv1.0 annot-version=v1.0 MTVLHCRSTFNYSLPRPHQASFSIHRLHLQLYAKKNPVDFNTKSTNKSRAAVPSSSNSTKPTKLVTSAEITSSRSNEETVAVLQPESVVNESHEFRGVAT RDNHGLGAKLNSMSKWAAAGAFGAVILWRRDGEATWVACGAVINFFLSVTLKSIVKQARPPSCTCRSDPGTPSSHAQTLFYVVTCAILATVKWVGRNEVS MILSTLFLASGSYLTWQRVLRKFHTAEQVAVGAVVGTSFGGLWYYGLWNGIMGQAFISSVWARAVVHLGALYTVHASFCISLTTCVMERNEYLCIGNLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	0	1
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	1.4	0.9741
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10007248 [exp]	3.9	0.9649
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	4.0	0.9652
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	5.3	0.9670
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	5.7	0.9662
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	6.9	0.9618
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10016334 [exp]	7.9	0.9522
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	9.2	0.9631
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	9.2	0.9624
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	9.3	0.9469

Compare expression of checked genes

Lus10028327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.