Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66450 232 / 2e-76 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT3G50920 216 / 4e-70 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) AT5G03080 46 / 7e-06 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041774 [exp] 400 / 1e-141 AT5G66450 229 / 3e-75 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028326 [exp] 232 / 9e-76 AT5G66450 160 / 2e-48 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10028327 [exp] 227 / 2e-73 AT3G50920 156 / 2e-46 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Lus10026489 [exp] 54 / 2e-08 AT5G03080 327 / 1e-114 Phosphatidic acid phosphatase (PAP2) family protein (.1) Lus10041773 [exp] 0 / 1 AT3G50920 101 / 7e-30 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120400 [exp] 258 / 8e-86 AT5G66450 219 / 9e-71 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.007G021600 [exp] 257 / 2e-85 AT5G66450 240 / 1e-78 Phosphatidic acid phosphatase (PAP2) family protein (.1), Phosphatidic acid phosphatase (PAP2) family protein (.2) Potri.006G130700 [exp] 60 / 2e-10 AT5G03080 313 / 2e-109 Phosphatidic acid phosphatase (PAP2) family protein (.1) Potri.016G086700 [exp] 53 / 4e-08 AT5G03080 297 / 4e-103 Phosphatidic acid phosphatase (PAP2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10028328 pacid=23166120 polypeptide=Lus10028328 locus=Lus10028328.g ID=Lus10028328.BGIv1.0 annot-version=v1.0 ATGATCGCCGGCCTAACTCTTCTTCCTAAGCCCACTTTAAAATTATCCTCCACTCGTCCTTACGAGGTCAAATCCTACAGACCCAGTTCGCGTCTTCGAC TTTCTGCTCGGAAATCTGCCGACTTTGACGGGACTGCTACTACGGGCAATAAGAGAGCCATGCCTGCAGAAATGAAGAAATCGTCTGGGATAGGCAGCTG GGGGAGTAAAAACGAGGAAAGTATCGGCGTACTCGAGCAGGAAGTTTTTGTCGAAGAGTCGACGCAGTTTCAAGCTTTATCGATTAGCAGCAGTGGATTG GAAGCCACCCTCAATAGCATGAGCAAATGGTTAGCATCGGCTGCATTCGGAGTTTTCTTTCTGTGGAGGCATGATGCTGAAGCTATGTGGGTGGTTACGG GTGCTGTGGTGAATGCTATGCTGTCAGTTGCACTCAAACGGATATTGAACCAAGAGAGGCCATTTCCTACTCCCAAATCTGACCCTGGAATGCCTTCTTC GCATGCTCAATCCATATTCTACATTGTTGCTTTTGCCGTCCTTGCAACTGTGGAATGGCTAGGAGTGAATGCAGTTTCTGTTATCCTCAGTTCCTTTCTT TTGGCAAGTGGCTCCTATTTTTCATGGCTACGAGTGTCACAAAAGCTACACACAGTGAGCCAAGTGGTGGTTGGGGCTATAGTGGGGGCAAGTTTCTCAA CCCTATGGTATTGGCTATGGAATGAATTTGTGCTTCAGGCTTTCATTTCATCTATTTGGGTTCGGCTGGTGGTTGTTCTGGGCGCTCTTGTATTCTGCAT ATCCTTCATCGTATATGTCATTAACCACTGGCTGAATGATGATTAG
AA sequence Show only first row Show all	>Lus10028328 pacid=23166120 polypeptide=Lus10028328 locus=Lus10028328.g ID=Lus10028328.BGIv1.0 annot-version=v1.0 MIAGLTLLPKPTLKLSSTRPYEVKSYRPSSRLRLSARKSADFDGTATTGNKRAMPAEMKKSSGIGSWGSKNEESIGVLEQEVFVEESTQFQALSISSSGL EATLNSMSKWLASAAFGVFFLWRHDAEAMWVVTGAVVNAMLSVALKRILNQERPFPTPKSDPGMPSSHAQSIFYIVAFAVLATVEWLGVNAVSVILSSFL LASGSYFSWLRVSQKLHTVSQVVVGAIVGASFSTLWYWLWNEFVLQAFISSIWVRLVVVLGALVFCISFIVYVINHWLNDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	0	1
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014614 [exp]	3.6	0.8849
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	3.7	0.9154
AT5G11680			unknown protein		Lus10027000 [exp]	4.0	0.9048
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	5.5	0.8901
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10014292 [exp]	10.9	0.8825
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10023358 [exp]	11.7	0.9013
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	15.0	0.8872
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	15.0	0.8408
AT3G48480			Cysteine proteinases superfami...		Lus10035097 [exp]	15.5	0.8790
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	15.5	0.8872

Compare expression of checked genes

Lus10028328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.