Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66440 81 / 1e-17 unknown protein AT4G34560 55 / 8e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041775 [exp] 360 / 8e-126 AT5G66440 123 / 1e-33 unknown protein Lus10014287 [exp] 63 / 6e-12 AT5G66440 79 / 4e-18 unknown protein Lus10042306 [exp] 49 / 2e-06 AT5G66440 97 / 2e-24 unknown protein Lus10040435 [exp] 46 / 1e-05 AT5G66440 104 / 3e-27 unknown protein Lus10023551 [exp] 45 / 4e-05 AT5G66440 95 / 2e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G021500 [exp] 127 / 5e-35 AT5G66440 147 / 6e-43 unknown protein Potri.005G120300 [exp] 120 / 2e-32 AT5G66440 134 / 4e-38 unknown protein Potri.009G119000 [exp] 68 / 3e-13 AT4G34560 90 / 8e-22 unknown protein Potri.004G157300 [exp] 65 / 3e-12 AT4G34560 107 / 9e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028329 pacid=23165981 polypeptide=Lus10028329 locus=Lus10028329.g ID=Lus10028329.BGIv1.0 annot-version=v1.0 ATGTGTTCCGTTACTACCACTACGGCCGCCACCTCCGCGGCCTCCCACCCGCCCTGCGCGCCGCACCGCGGCTTCCGTACTGCCTTCCGCGCCGTTGAGT TCTTGGCTGCTCTGCTACTCTTCCTCTGGATGTCCACTCACCTCCCGATCGCTGTCCAGATCTCCGCCGCCTTCTTCCGACGCCTCGCCACCGTCATCGA GAGCCCTCCCTTCGTTTTCCTCATCTGCAACGCCATCATCGTCACGCTCATCGTCAAACCCGGCAGATTCGCCTCAGAGAATCCGGCCGAGGCGAAGAAT GCCGACGACGATCTCTATGGTGAGATCCTCAAGAACGCCGAATCCAGCTTCCAGAAGACGATCTCCGAGGTTCCCCTGCCTACTCCTCCGACGTTTGCGG CGGCGGAGGACGCGGCGGATGTGTTTGAGGACAAAGAGATTATTGTCTCCCCGATCAAATCTATCGCTCCTCAAGTCGCTGCTTGCGAAACCGAAGATGC CGATTCCAAGAGCGATGACGTCGTTTTCTACTCTTCGGAATCTGAATCGGACGCGGTTGAGGGGAAAGTTTTCCGACGGACGAGGTCGGAGAATCTGCAG AGGAGGCGGGGAGAGAAGAAGAAGAAGCTGCAGAGGTCGGAGACTGAGAAGAGCTGGAAAGCGGTGAAGTCGAGCGAAGAAAGAGAGGAAGAGGAGGAGC TGAGCGACGAGGAGTTCCAGCGGGCGGTGGAAGAGTTCATCGCCAAGAATTTGAGGCTTCGCCGGCAAGAGACATTGGGAGTTGTGCATCAGAGGCCGAG GAGCTCGGTGGCCCAATTCGAGCTAAGGAGTGAAATAGTAATTAATTAG
AA sequence Show only first row Show all	>Lus10028329 pacid=23165981 polypeptide=Lus10028329 locus=Lus10028329.g ID=Lus10028329.BGIv1.0 annot-version=v1.0 MCSVTTTTAATSAASHPPCAPHRGFRTAFRAVEFLAALLLFLWMSTHLPIAVQISAAFFRRLATVIESPPFVFLICNAIIVTLIVKPGRFASENPAEAKN ADDDLYGEILKNAESSFQKTISEVPLPTPPTFAAAEDAADVFEDKEIIVSPIKSIAPQVAACETEDADSKSDDVVFYSSESESDAVEGKVFRRTRSENLQ RRRGEKKKKLQRSETEKSWKAVKSSEEREEEEELSDEEFQRAVEEFIAKNLRLRRQETLGVVHQRPRSSVAQFELRSEIVIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66440			unknown protein		Lus10028329 [exp]	0	1
AT5G07960			unknown protein		Lus10021623 [exp]	4.2	0.8720
AT5G66440			unknown protein		Lus10041775 [exp]	5.7	0.8921
AT3G01490			Protein kinase superfamily pro...		Lus10022227 [exp]	6.9	0.8771
AT3G04560			unknown protein		Lus10022011 [exp]	9.5	0.8417
AT2G32980			unknown protein		Lus10030015 [exp]	12.7	0.8379
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	12.8	0.8257
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10021745 [exp]	21.9	0.8384
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10041194 [exp]	22.8	0.8410
AT5G40580		PBB2	20S proteasome beta subunit PB...		Lus10014581 [exp]	25.4	0.8240
AT4G30400			RING/U-box superfamily protein...		Lus10019973 [exp]	26.9	0.8195

Compare expression of checked genes

Lus10028329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.