Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06330 42 / 5e-05 Heavy metal transport/detoxification superfamily protein (.1) AT1G01490 39 / 0.001 Heavy metal transport/detoxification superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027524 [exp] 62 / 2e-11 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 57 / 1e-09 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 51 / 5e-08 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007455 [exp] 51 / 1e-07 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10027523 [exp] 45 / 4e-06 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10022508 [exp] 42 / 4e-05 AT4G39700 201 / 2e-67 Heavy metal transport/detoxification superfamily protein (.1) Lus10016812 [exp] 42 / 5e-05 AT4G39700 181 / 3e-59 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 41 / 0.0001 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 41 / 0.0001 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G120200 [exp] 91 / 1e-23 AT3G05220 64 / 8e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.007G021200 [exp] 90 / 3e-23 AT3G05220 65 / 6e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.018G148900 [exp] 65 / 7e-14 AT1G01490 66 / 1e-14 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G079400 [exp] 54 / 1e-09 AT5G37860 66 / 4e-14 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G032800 [exp] 48 / 2e-07 AT3G05920 52 / 2e-09 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G230300 [exp] 47 / 3e-07 AT1G01490 57 / 3e-11 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 44 / 6e-06 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G092200 [exp] 43 / 2e-05 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G073000 [exp] 42 / 4e-05 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 42 / 5e-05 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10028331 pacid=23166081 polypeptide=Lus10028331 locus=Lus10028331.g ID=Lus10028331.BGIv1.0 annot-version=v1.0 ATGCAGAGAACGGTGCTCAAGGTAGAAATCGATTGTGTGAAATGCAAAAAGAAGCTCCTGAAGGCTGTTTCTGGTGTCCATGGTGTGGACAAGATCGAAA TCGACGAAGCAAAGGGAACACTCACCGTCACTGGGAATGCTGATCCGTACGAGGTAATTGTCTGGTCAAGGAAAACCGGGAAGCGCGTTGAAGTCGTGAG CATTGGGCCGCCGCCGCCGAAACAACAGGAAACTGGTGCAGGGCAGCCGAAAAAACCTGACGACAAGAAATCTGCTGCTGGAGACGCTGGAGGAGGCGGA GGAGGAGATGTAAAGAAGACTACTAGCGGCGGCGACCAGAGAAAAGGCGGCGGCGGTAATGGTGGGGAGGAAAAGAAAGCGGCAGAGCAGAAGGGGGAGA AGGGGATGATGCAGAGTTGGCCATTGGTCAACCACCAGCACCACCACGACCCACTTAACTGTCCATATTGTCAAAGAATCGTTGTAGTTCCGATGACCAG CTCCTCCTATGACCGTTACTACCACGATCACAACAACCCGTCTTGCTACATAATGTAA
AA sequence Show only first row Show all	>Lus10028331 pacid=23166081 polypeptide=Lus10028331 locus=Lus10028331.g ID=Lus10028331.BGIv1.0 annot-version=v1.0 MQRTVLKVEIDCVKCKKKLLKAVSGVHGVDKIEIDEAKGTLTVTGNADPYEVIVWSRKTGKRVEVVSIGPPPPKQQETGAGQPKKPDDKKSAAGDAGGGG GGDVKKTTSGGDQRKGGGGNGGEEKKAAEQKGEKGMMQSWPLVNHQHHHDPLNCPYCQRIVVVPMTSSSYDRYYHDHNNPSCYIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06330			Heavy metal transport/detoxifi...		Lus10028331 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	1.7	0.9282
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	5.5	0.8168
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	8.9	0.8492
AT4G31880			unknown protein		Lus10002307 [exp]	9.5	0.8811
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	11.2	0.7821
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10011662 [exp]	11.6	0.8686
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	13.6	0.8367
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10017351 [exp]	22.4	0.7598
AT5G42230		SCPL41	serine carboxypeptidase-like 4...		Lus10023444 [exp]	23.8	0.8075
AT5G45650			subtilase family protein (.1)		Lus10026062 [exp]	26.1	0.8049

Compare expression of checked genes

Lus10028331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.