Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18180 631 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G36490 630 / 0 ATSFH12 SEC14-like 12 (.1) AT4G34580 560 / 0 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39180 541 / 0 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21520 533 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 524 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 509 / 5e-176 ATSFH3 SEC14-like 3 (.1.2.3) AT2G16380 504 / 7e-174 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G19650 473 / 1e-160 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G75370 433 / 3e-145 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041779 [exp] 1025 / 0 AT2G18180 645 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025988 [exp] 818 / 0 AT2G18180 662 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10040432 [exp] 548 / 0 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10023547 [exp] 547 / 0 AT2G21540 664 / 0.0 SEC14-like 3 (.1.2.3) Lus10040431 [exp] 514 / 7e-177 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 508 / 1e-173 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023546 [exp] 502 / 4e-172 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 494 / 2e-168 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026355 [exp] 489 / 3e-168 AT2G21540 583 / 0.0 SEC14-like 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G119700 [exp] 701 / 0 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.007G020300 [exp] 674 / 0 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.004G157600 [exp] 610 / 0 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.009G119400 [exp] 601 / 0 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.004G157700 [exp] 547 / 0 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119500 [exp] 539 / 0 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G032600 [exp] 480 / 1e-163 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 468 / 9e-159 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.002G243000 [exp] 406 / 2e-134 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.011G168300 [exp] 360 / 9e-117 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10028332 pacid=23166152 polypeptide=Lus10028332 locus=Lus10028332.g ID=Lus10028332.BGIv1.0 annot-version=v1.0 ATGGCTGGAGAGTCTCGTCGGCCAAATACACCGCCGATAGAGCAGAAGAGCCGGAGGAGGATCGAGTCGTTGAAGCAGAGAGCAATTAATGCTTCGAAAA AGCTGAGGAATTCGTTTAAGAGATCAGGAAGAAGGAGCAGCAGGATAATGTCGGTCGAGATAGAGGACGAGCACGATGCCGAGGAGTTGAAGCAAGTCGA TGCGTTCCGTCAGGTTCTTATATTGGAGGAACTTTTGCCTTCCAAGCACGATGATTACCATGTTATGCTTCGGTTCCTCAAGGCGAGGAAATTCGACCTC GAGAAAACCAAGCAAATGTGGTCCGATATGCTTCAGTGGAGGAAAGAATTCGGAGCCGACACAATCATGGAGGACGCTGATTTGGTTGTTGCTGTTTGTT TTCTCTTGAAGGATTTCGAATTCAACGAGATAGATGAAGTGTTGCAGCATTATCCACAAGGACATCACGGTGTGGATATGGAAGGCAGACCGGTTTACGT AGAGAGGCTTGGACTAGTTGACGCCACAAAGTTAATGCAAGCCACCAACATGGATAGATACGTCAAGTACCATGTTCAGGAATTTGAGAGGACTTTTGCT GTTAAGTTTCCTGCTTGCTCCATTGCTGCTAAGAAGCAAATTGATCAAAGTACCACCATCTTGGATGTCCAAGGAGTGGGTCTTAAGAACTTCAACAAGG CTGCAAGGGAGCTCATCACCCGCCTTCAGAAGGTTGATGGTGACAATTATCCTGAGACATTGAACCGAATGTTCATCATTAATGCCGGTTCTGGATTCAG AATGTTATGGAACACAGTAAAATCCTTCCTTGACCCTAAGACAACGGCTAAGATCCATGTTCTTGGCAATAAGTACCAGAGCAAGTTACTTGAGATCATT GATGCCAGCGAGTTGCCAGAGTTCTTGGGAGGAACTTGCACATGCGAGGAACATGGTGGATGCATGCGGTCTGATAAAGGTCCATGGAAGGATGAAGAAA TCATTAAGATGATTCAAAATGGAGAGCACAAATGTAAAAAGACAAGTAGTGACCTTGATGATAAACCAGATGAGAAGACCATCTCTGAGGATGAGATCGT CTACTCAAAGGGAAATGACTCTAAGGAAGAGTCAAATCCAGAGGGGGATAACAACATGGCAGCAGTTCCAAGGTCCCAAATTGAGCACCCTCAGATTGCT CCAATCCTTCACCAACTCAGTAAGAAAATGTCATTGAAAGGCTACAATGGTGCAATTGTTAAGAAACAAGCTAACGTTAGGTGGAAGAAAGCCGTCAACA ACCAGAAATTTGGTGCCCTTGCTAAAGGTCCATTGAATGCTCACACTTTATCAGCAGACAGTTTACCACTCATAGATGCCCACAAGTTTCTTGCTGAGGG GGCAAGCTCACCGTTGATCACTGGTGTCATGGCGTTCGTCACGGGAATCGTAACAATGATCAAGGTGACGAGGAACATGCCCAAGAAACTAAGCAATGGT ACGGTCTACCCTGGCCCCATGTACTACGACGAACAAATGCCAAGAGCAATGCAGCCTATAGTCACTCAGCCTGCAGTCCCTACAGTGGCTGTATCAGAGT TCATGGCCGTGGTGAAAAAGATGAATGAGATGGAAGATAAAGTGACCGTGTTGAGCAACCGGCCGAATCTGATGCCTGCTGAGAAAGAGGACTTGTTGAA TGCCGCTTTGAGCCGGATCGATACCTTGGAGGAAGAGCTTGCTGCTACGAAGAAGGTATTGTAA
AA sequence Show only first row Show all	>Lus10028332 pacid=23166152 polypeptide=Lus10028332 locus=Lus10028332.g ID=Lus10028332.BGIv1.0 annot-version=v1.0 MAGESRRPNTPPIEQKSRRRIESLKQRAINASKKLRNSFKRSGRRSSRIMSVEIEDEHDAEELKQVDAFRQVLILEELLPSKHDDYHVMLRFLKARKFDL EKTKQMWSDMLQWRKEFGADTIMEDADLVVAVCFLLKDFEFNEIDEVLQHYPQGHHGVDMEGRPVYVERLGLVDATKLMQATNMDRYVKYHVQEFERTFA VKFPACSIAAKKQIDQSTTILDVQGVGLKNFNKAARELITRLQKVDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEII DASELPEFLGGTCTCEEHGGCMRSDKGPWKDEEIIKMIQNGEHKCKKTSSDLDDKPDEKTISEDEIVYSKGNDSKEESNPEGDNNMAAVPRSQIEHPQIA PILHQLSKKMSLKGYNGAIVKKQANVRWKKAVNNQKFGALAKGPLNAHTLSADSLPLIDAHKFLAEGASSPLITGVMAFVTGIVTMIKVTRNMPKKLSNG TVYPGPMYYDEQMPRAMQPIVTQPAVPTVAVSEFMAVVKKMNEMEDKVTVLSNRPNLMPAEKEDLLNAALSRIDTLEEELAATKKVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18180			Sec14p-like phosphatidylinosit...		Lus10028332 [exp]	0	1
					Lus10010253 [exp]	1.4	0.9833
					Lus10027774 [exp]	2.0	0.9746
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10033932 [exp]	3.2	0.9088
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	4.9	0.9478
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Lus10039719 [exp]	5.3	0.9190
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10017615 [exp]	6.0	0.9214
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	11.4	0.9217
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002244 [exp]	12.8	0.8612
					Lus10032670 [exp]	13.6	0.9299
AT3G09730			unknown protein		Lus10023175 [exp]	16.5	0.8240

Compare expression of checked genes

Lus10028332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.