Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75390 123 / 8e-36 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT4G34590 121 / 3e-35 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT2G18160 112 / 2e-31 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G62420 87 / 7e-22 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT2G04038 67 / 3e-14 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT5G38800 66 / 1e-13 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT5G15830 66 / 2e-13 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT1G13600 65 / 3e-13 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT3G30530 64 / 5e-13 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT4G37730 65 / 1e-12 bZIP ATBZIP7 basic leucine-zipper 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041780 [exp] 266 / 7e-92 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10024279 [exp] 130 / 1e-38 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 125 / 8e-37 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10040428 [exp] 111 / 4e-31 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10010005 [exp] 91 / 2e-23 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10025024 [exp] 89 / 2e-22 AT3G62420 161 / 9e-52 basic region/leucine zipper motif 53 (.1) Lus10013059 [exp] 69 / 3e-14 AT3G30530 147 / 8e-45 basic leucine-zipper 42 (.1) Lus10011722 [exp] 69 / 3e-14 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10029101 [exp] 68 / 4e-14 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119700 [exp] 131 / 2e-39 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.007G019900 [exp] 128 / 7e-38 AT1G75390 130 / 5e-39 basic leucine-zipper 44 (.1.2) Potri.005G231300 [exp] 128 / 7e-38 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.004G158200 [exp] 126 / 3e-37 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.005G119300 [exp] 126 / 4e-37 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.002G031900 [exp] 124 / 3e-36 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.002G196200 [exp] 92 / 8e-24 AT3G62420 182 / 3e-60 basic region/leucine zipper motif 53 (.1) Potri.014G120800 [exp] 91 / 2e-23 AT3G62420 161 / 8e-52 basic region/leucine zipper motif 53 (.1) Potri.007G006900 [exp] 76 / 6e-17 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.014G007100 [exp] 74 / 2e-16 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10028333 pacid=23166040 polypeptide=Lus10028333 locus=Lus10028333.g ID=Lus10028333.BGIv1.0 annot-version=v1.0 ATGGCGTCATCTAGCACCGGCGCGTCGTCCGGATCAAGCGGCGGCGGAGGAGCTCTACTGTTGAGAAACTCAAGCTCGGAGGAAGATCTGCAGGCGGCGG TGGTTGACGAGAGGAAGCGGAAGAGGAAGCTGTCGAACAGGGAATCGGCGCGCCGATCGAGGCTGAGGAAGCAAAAGCACATGGACGATCTGGCGGCTCA GGTGGCTCAGCTGAAGAAGGAGAACGCCGAGATCCTCACTAGCATGAACCTCAACACTCAGCTCTTGCTGGGCGTGGAAGCCGATAACTCCGTGCTCCGT GCACAAGCCGACGAGCTCAACCATCGGCTCGAGTCTCTCGGCGAAATCGTCAGTTACGTTGACTCCCTCCGAAACGGCCCCGTTCAAGCCTCCGGCGCCC CTAACAACGCCACCGGAAGTAGTGGTACAACAAGTGATGGTGATGATCTGTTTGAGGAGGCGGCGGGCACGGATGAGTGTTTGATGACGACGAACGAAAT GAATCCGTGGATTTGTTCTTCTTCCTCTTACCAGCCGATGATGATGGACATGGTTATGTACTAG
AA sequence Show only first row Show all	>Lus10028333 pacid=23166040 polypeptide=Lus10028333 locus=Lus10028333.g ID=Lus10028333.BGIv1.0 annot-version=v1.0 MASSSTGASSGSSGGGGALLLRNSSSEEDLQAAVVDERKRKRKLSNRESARRSRLRKQKHMDDLAAQVAQLKKENAEILTSMNLNTQLLLGVEADNSVLR AQADELNHRLESLGEIVSYVDSLRNGPVQASGAPNNATGSSGTTSDGDDLFEEAAGTDECLMTTNEMNPWICSSSSYQPMMMDMVMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	0	1
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10041780 [exp]	2.8	0.9406
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10041824 [exp]	3.7	0.8839
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	6.3	0.8747
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10027878 [exp]	7.3	0.8638
AT3G02645			Plant protein of unknown funct...		Lus10009504 [exp]	8.5	0.8567
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	10.2	0.8437
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	10.4	0.9073
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027857 [exp]	10.9	0.8874
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	12.0	0.8898
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034222 [exp]	14.9	0.8777

Compare expression of checked genes

Lus10028333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.