Gene [FLAX] | FIBexDB

Lus10028334 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10029682 [exp]	87 / 6e-24	ND	/
Lus10018433 [exp]	83 / 3e-20	AT1G61330	109 / 2e-25	FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Lus10042721 [exp]	78 / 2e-18	AT1G21750	684 / 0.0	ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Lus10034733 [exp]	76 / 2e-17	AT1G61320	110 / 5e-26	FBD / Leucine Rich Repeat domains containing protein (.1)
Lus10010664 [exp]	72 / 2e-16	AT1G61320	125 / 6e-31	FBD / Leucine Rich Repeat domains containing protein (.1)
Lus10011971 [exp]	69 / 5e-15	AT1G61320	103 / 2e-23	FBD / Leucine Rich Repeat domains containing protein (.1)
Lus10011254 [exp]	62 / 9e-13	AT1G61330	84 / 6e-17	FBD, F-box and Leucine Rich Repeat domains containing protein (.1)
Lus10033364 [exp]	50 / 1e-08	AT4G38540	84 / 4e-34	FAD/NAD(P)-binding oxidoreductase family protein (.1)
Lus10006726 [exp]	47 / 1e-07	AT1G61330	66 / 1e-12	FBD, F-box and Leucine Rich Repeat domains containing protein (.1)

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10028334 pacid=23166089 polypeptide=Lus10028334 locus=Lus10028334.g ID=Lus10028334.BGIv1.0 annot-version=v1.0

ATGGTGACCCATTGGATAAACAAAGCGTCCCAAAAGGACGTCGAAGAGTTGGAGCTGAATTTCAACCATGAGTTAGAGCCGTTCAGGGTGACATCCGACC

TCATATTCCAGATCAAGACCCTTGAGGCCCTTCATGTGGTGGACATCGATTTTTTGGTCACCGGGCTTAGGTTCCTCAAGATTTGCTCGATGAAGAAGGT

GATGGTGAATCTTGTGAGTATTGAGGTGATGACCACTACTAATGTATTGTTCTAA

AA sequence

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>Lus10028334 pacid=23166089 polypeptide=Lus10028334 locus=Lus10028334.g ID=Lus10028334.BGIv1.0 annot-version=v1.0

MVTHWINKASQKDVEELELNFNHELEPFRVTSDLIFQIKTLEALHVVDIDFLVTGLRFLKICSMKKVMVNLVSIEVMTTTNVLF

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028334 [exp]	0	1

Lus10028334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.