Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29250 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) AT3G23840 86 / 7e-18 HXXXD-type acyl-transferase family protein (.1) AT5G02890 83 / 3e-17 HXXXD-type acyl-transferase family protein (.1) AT4G13840 72 / 1e-13 HXXXD-type acyl-transferase family protein (.1) AT3G26040 70 / 1e-12 HXXXD-type acyl-transferase family protein (.1) AT1G32910 69 / 3e-12 HXXXD-type acyl-transferase family protein (.1) AT4G31910 68 / 5e-12 HXXXD-type acyl-transferase family protein (.1) AT3G48720 67 / 6e-12 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 67 / 8e-12 HXXXD-type acyl-transferase family protein (.1) AT1G24430 66 / 2e-11 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041782 [exp] 783 / 0 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 96 / 5e-21 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 78 / 4e-15 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10004360 [exp] 74 / 4e-14 AT5G02890 220 / 1e-68 HXXXD-type acyl-transferase family protein (.1) Lus10011003 [exp] 73 / 8e-14 AT5G02890 213 / 5e-66 HXXXD-type acyl-transferase family protein (.1) Lus10000592 [exp] 72 / 2e-13 AT5G02890 217 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 71 / 7e-13 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10005439 [exp] 69 / 3e-12 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10005358 [exp] 69 / 4e-12 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032700 [exp] 447 / 7e-155 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.013G039700 [exp] 200 / 1e-58 AT4G29250 218 / 2e-65 HXXXD-type acyl-transferase family protein (.1) Potri.005G052200 [exp] 190 / 4e-55 AT4G29250 207 / 9e-62 HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 98 / 7e-22 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.018G105500 [exp] 80 / 6e-16 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G153600 [exp] 79 / 1e-15 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.005G028100 [exp] 78 / 2e-15 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 74 / 7e-14 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.019G001200 [exp] 72 / 1e-13 AT3G26040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1) Potri.003G082100 [exp] 72 / 1e-13 AT5G02890 191 / 1e-57 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10028335 pacid=23166074 polypeptide=Lus10028335 locus=Lus10028335.g ID=Lus10028335.BGIv1.0 annot-version=v1.0 ATGGCAGATGATCAAACAGTGACGTACATATGCAAGAGAACCGTGGTGAGCACCAAACCGGTCCAACCAGGGAAGCGACATTCGCTGTCGGTCCTGGACC GGTTAATGGGAGATGAGAGCCACCTGAAGATAGTGTACTATCTTAGAACCCCGCCGGATGGCTATGAATCTGGGGAGATCACCAAGATGCTCAGGGAATC TCTGGCCGAGACACTTACGTTTTACCCCATAGTGACGGGCAGGCTTTTGAAAGAGGAAGACGGAAAGAGTTGGATGATCAAATGTAATGATGCAGGGGTT AGAATGGTGGAGGCCACAGCCAGAGGGAGTGTGGATCAATGGCTTGCTCATCTTGATAGGGAAAAGGAAATGAAGCTTGTCCATTGGGAGCCAATGTTCC ATAAGCCTTACTTTTGGTCCACTTTCTATCTTCAGGTGACTGAATTTGAGGGTGGAGGCGTGGCAATCGGGCTGGGCTGCTTTCACCTTTTGTTGGATCC AGTATGCGCCACTATGTTCATCAAGGCATGGGCTGACATAACTTCACAAGGAAGATTGCTCGGCCCACCATTCTTCCACGCTCTGCCAACACCTAAGCCC ATTCACAACATCAGCAGCAATAAAGCCACTAATAACAACTTGATCAACCACTACAAGAATATCAATGTAACATCTGATCAAACAACTCCTAAAGTCATGA CTACTTCCTCCACTCTCTCCTTCTCGTTCACGGACTCAATGGTCCAATCATGCATGGACATGGCTCGTGCATCCACAGGATCGAGTTCGCCTTCCCCCTT CGAGGCACTATCCGGCCTCTTCTGGATAATCCTGCGCAAAATAAAGGGAGGAACAACCATTAGTGGGCTAATGGATATGTCGATCTCTTTAGATGCGAGA AGCATATTGAGTCTGGACAAAGGATTCTTCGGAAATTGCATGGTCCGTAATAAAGTTGTGTATAGTTCAAGTGGCGACTCTTCCATGATGATGTCATTAC CAAATGTAGTTGCTGCCATCGGAGAAGCAGTTGAAGAAATAATGGACCCGAGCTCGGTGATGGCCTTGATCGAGTGGCTGAAATACAACGATCGTGAAGA TCAAGTACCGAAGTCCCTATCTCGGGGAAATGGCGGTGATTCTGAGTTGGTTTGTATTGGGTTGGAAGGTGTAGAGCCATACTCGGTCGGGTTTGGAGAT GGGTTCGAGCCGATTCAAGTGTCATACCATGTTGAACCTATTGGAGATAAATGGCATGTTTTGATTCTTCCAGGGAGAGGTGGAGATGGGAAGCTGGGCA GAGTGGTGATGCTGACAATTCCCAAGGAGTTTGTGGGTAATTTATGTGGAGATGAAGTTATTCAGAGCTTGTCTCCAAGTATTGTGATGGTGGGATGA
AA sequence Show only first row Show all	>Lus10028335 pacid=23166074 polypeptide=Lus10028335 locus=Lus10028335.g ID=Lus10028335.BGIv1.0 annot-version=v1.0 MADDQTVTYICKRTVVSTKPVQPGKRHSLSVLDRLMGDESHLKIVYYLRTPPDGYESGEITKMLRESLAETLTFYPIVTGRLLKEEDGKSWMIKCNDAGV RMVEATARGSVDQWLAHLDREKEMKLVHWEPMFHKPYFWSTFYLQVTEFEGGGVAIGLGCFHLLLDPVCATMFIKAWADITSQGRLLGPPFFHALPTPKP IHNISSNKATNNNLINHYKNINVTSDQTTPKVMTTSSTLSFSFTDSMVQSCMDMARASTGSSSPSPFEALSGLFWIILRKIKGGTTISGLMDMSISLDAR SILSLDKGFFGNCMVRNKVVYSSSGDSSMMMSLPNVVAAIGEAVEEIMDPSSVMALIEWLKYNDREDQVPKSLSRGNGGDSELVCIGLEGVEPYSVGFGD GFEPIQVSYHVEPIGDKWHVLILPGRGGDGKLGRVVMLTIPKEFVGNLCGDEVIQSLSPSIVMVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29250			HXXXD-type acyl-transferase fa...		Lus10028335 [exp]	0	1
AT5G57820			zinc ion binding (.1)		Lus10007703 [exp]	4.6	0.9155
					Lus10025095 [exp]	4.7	0.9422
AT3G26950			unknown protein		Lus10032011 [exp]	6.7	0.8648
AT1G24735			S-adenosyl-L-methionine-depend...		Lus10021804 [exp]	8.1	0.9407
AT2G37880			Protein of unknown function, D...		Lus10021495 [exp]	8.3	0.9098
AT3G19540			Protein of unknown function (D...		Lus10028040 [exp]	10.1	0.9366
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10004629 [exp]	11.0	0.8730
					Lus10025317 [exp]	11.4	0.8218
					Lus10023587 [exp]	11.7	0.9366
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	12.4	0.8081

Compare expression of checked genes

Lus10028335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.