Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36420 117 / 2e-33 Ribosomal protein L12 family protein (.1) AT1G70190 98 / 1e-25 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) AT3G06040 84 / 3e-20 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) AT4G37660 77 / 5e-18 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT2G03130 64 / 1e-13 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G27850 53 / 7e-09 RPL12-C ribosomal protein L12-C (.1) AT3G27830 53 / 7e-09 RPL12-A ribosomal protein L12-A (.1) AT3G27840 45 / 7e-06 RPL12-B ribosomal protein L12-B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041783 [exp] 252 / 2e-86 AT4G36420 174 / 5e-56 Ribosomal protein L12 family protein (.1) Lus10038367 [exp] 105 / 4e-28 AT1G70190 243 / 3e-82 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10036228 [exp] 104 / 4e-28 AT1G70190 238 / 3e-80 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10031756 [exp] 93 / 1e-23 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10023839 [exp] 91 / 6e-23 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10000093 [exp] 91 / 6e-23 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10031180 [exp] 90 / 1e-22 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10021011 [exp] 90 / 2e-22 AT4G37660 157 / 3e-49 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10022261 [exp] 59 / 4e-11 AT3G27850 178 / 4e-57 ribosomal protein L12-C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019100 [exp] 151 / 1e-46 AT4G36420 127 / 2e-37 Ribosomal protein L12 family protein (.1) Potri.003G074800 [exp] 98 / 1e-25 AT1G70190 204 / 1e-66 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Potri.015G077200 [exp] 97 / 2e-25 AT3G06040 132 / 3e-39 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Potri.004G224300 [exp] 80 / 4e-19 AT4G37660 154 / 4e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Potri.001G346100 [exp] 53 / 1e-08 AT3G27830 146 / 1e-44 ribosomal protein L12-A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00542 [flax] [poplar] Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028336 pacid=23166101 polypeptide=Lus10028336 locus=Lus10028336.g ID=Lus10028336.BGIv1.0 annot-version=v1.0 ATGTCAAAGTTCCGATTGATTTTACGGCCTTTGTGGCGGGATCGGCGAACCCTCGATCGGAGACCTGCGTTTACCCGCCAATTTGCTTCGGCAGCACAGG ATTCGGTTCCGAAGGCGGCGCCATCGGAAAGGGTTTCGGAAATCGTGAACGAGATCTCAGGTTTAACTCTTCTGGAAGTCTCGGATCTCACCGAGGTTCT GCGGACCAAGTTGGATATCAAGGAGATGCCTGTGATGGCCATGATGATGCCAGGTATGGGGTTCAGTGGGATGCCCGGAGGTGGAAGGGGAGCTGCCGCG CCTTCTGCCAAAGGAGAGGAGAAGGCGGAAAAGACGGCGTTCGATTTGAAGCTAGATGGGTACGACGCGGCGGCGAAGATCAAGGTGATTAAGGAAGTTA GGGCGTTTACGGATTTGGGGTTGAAAGAAGCGAAGGACTTGGTGGAGAAAGCTCCTACATTGTTGAAGAAAGGAGTGACGAAAGAAGAAGCTGAGAAGAT TATTGCTAAGCTGAAGGAGGTTGGGGCCAAAGTTTCTATGGAGTGA
AA sequence Show only first row Show all	>Lus10028336 pacid=23166101 polypeptide=Lus10028336 locus=Lus10028336.g ID=Lus10028336.BGIv1.0 annot-version=v1.0 MSKFRLILRPLWRDRRTLDRRPAFTRQFASAAQDSVPKAAPSERVSEIVNEISGLTLLEVSDLTEVLRTKLDIKEMPVMAMMMPGMGFSGMPGGGRGAAA PSAKGEEKAEKTAFDLKLDGYDAAAKIKVIKEVRAFTDLGLKEAKDLVEKAPTLLKKGVTKEEAEKIIAKLKEVGAKVSME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36420			Ribosomal protein L12 family p...		Lus10028336 [exp]	0	1
AT5G60340			P-loop containing nucleoside t...		Lus10016525 [exp]	2.4	0.8012
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	9.3	0.7970
AT4G18905			Transducin/WD40 repeat-like su...		Lus10015348 [exp]	10.2	0.7623
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	12.6	0.7152
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10014951 [exp]	13.6	0.7568
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	14.2	0.7934
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	16.0	0.7034
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	17.3	0.7764
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10015247 [exp]	17.5	0.7440
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	21.5	0.7445

Compare expression of checked genes

Lus10028336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.