Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66390 332 / 2e-109 Peroxidase superfamily protein (.1) AT2G18150 330 / 1e-108 Peroxidase superfamily protein (.1) AT4G36430 327 / 1e-107 Peroxidase superfamily protein (.1) AT4G36440 329 / 3e-107 unknown protein AT2G18140 301 / 3e-97 Peroxidase superfamily protein (.1) AT3G50990 295 / 7e-95 Peroxidase superfamily protein (.1) AT1G44970 288 / 5e-92 Peroxidase superfamily protein (.1) AT5G06720 254 / 4e-79 ATPA2 peroxidase 2 (.1) AT2G35380 249 / 2e-77 Peroxidase superfamily protein (.1.2) AT4G08770 246 / 8e-76 Prx37 peroxidase 37, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041785 [exp] 586 / 0 AT4G36440 336 / 4e-114 unknown protein Lus10041784 [exp] 421 / 5e-144 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10010634 [exp] 299 / 2e-96 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10034207 [exp] 256 / 4e-80 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10040107 [exp] 258 / 4e-75 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10004163 [exp] 242 / 2e-74 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10008581 [exp] 240 / 3e-74 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10006534 [exp] 236 / 1e-72 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009936 [exp] 236 / 3e-72 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019300 [exp] 372 / 8e-125 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 369 / 7e-124 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.007G019400 [exp] 370 / 4e-123 AT4G36440 491 / 1e-173 unknown protein Potri.002G031200 [exp] 286 / 3e-91 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.008G103200 [exp] 256 / 8e-80 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 251 / 2e-78 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 252 / 3e-78 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.013G083600 [exp] 248 / 4e-77 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 245 / 1e-75 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214500 [exp] 242 / 8e-75 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10028337 pacid=23166155 polypeptide=Lus10028337 locus=Lus10028337.g ID=Lus10028337.BGIv1.0 annot-version=v1.0 ATGTGGGCAATGCTGAGGATTTCTGTTTCATTTTTTCGCTGTAGCATCTTGAAATTGGAGGTTTCCCGAGGCTTGCCGTACTGCCCCATGGATTCTTTCA CCTGGTTATGCATCCTGCTCATAGCTGTACTGTTACAGGTGTTATGCGCTGCTGCTGTTCCAGGATATATTGATTTTGGCCGGTTCAATGAGCCTTACTC TTTCCACCGTGGTTCAGGACATGTGGACTTTGTTCAAGAATTTTACAACGGTGACCTTGTAAACTGCGAGAATAGTTATGATAAACTGGGACGCACTGCT AAGGTGAACCTCCTATGCGGAAGTTGCTTAAATGGAGCATGTAGAGGTGGACTTGGCTGCATATGCAATTTCACGTATGAGTCAAGTTGCAGGGTTATTA TTGATCTTTCGATTCCATGTGAGAAACCAGGTCATCGTGTATTCCAAGGTTTCACCGTCGGATTCCACCCACGGACCTGGGAAATTGTCTACGATGGTCT TACTCAGCCAGGGTTTGAGAAACCCAAGCAGGATTTTAGCTTTGACACGGAACAAAATGCTGTTTCCCTGTACATGACAGCAGTTGCTTCCCTTTCTGCT TTGGTGAAAAAACCCATAATTGAGGTTCATCCTGGTAAAGGCCTGGAGGTTAGATTGTCTGGGTCAGCGGCAAAAGCTACTCCTCCAACGACTTTGTCGC CTAGCATCTTGATTGTGGAATGGGAATGTCAGAAGGGTCGACACACACCATATGAAATAAACGTCACAATACCTATTGACGGTTATGATCCTGTCCAGTT TTTTCTTACGAAAATGTGCGGTAAGCTCCCTCCCAATACTTGCCTTCTGCATGGAATTGATGCTCTGCCAGGAATGACAATCATATCTGCATGTTTAGAG ACTGTAAGTGGCATGGGGCAAGGTTATGCCTACTCGCGAGCAGACGAGGTAAATAGTGGCTATGCTAGTAACGCCTCCTGGGATCGTACTTCTGTATCGG CATCTGCATCTGGATCTGCAGCTTCTTCAGCTCCAGCTCAAGGAAACTGGAGGCCCGGCACTTTCTATGACTACTCTTGCCCTCAAGCTCACCAGATTGT CAAGTCTGTTGTGGCCAAGGCAGTTGCCAAAGAACCCCGGATGGCTGCTTCGTTGCTCAGGCTGCATTTCCATGACTGCTTCGTAAAGGGATGTGATGCT TCAATCCTGCTGGATGGAGGTTCAGGCATTGCAACTGAGAAGAACTCGAATCCGAATCGGAATTCTGCGAGAGGATTCGAAGTGATCGATGACATCAAGT CTGCATTGGAGAAGGAATGTCCTAACAAAGTTTCTTGTGCTGATATCCTGACCCTAGCTGCCAGAGACTCCACTGTACTTGCTGGAGGACCAAGCTGGGA GGTACCACTGGGGAGAAAGGACTCAAGAAGTGCAAGCTTGAGTGGTTCCAACAACAACATTCCAGCTCCAAACAACACATTCCAGACAATCCTGACAAAG TTCAAGCTCCAAGGCCTTAACACTGTGGACCTTGTAGCATTGTCAGGAAGCCACGCGTTAACAAGAAACCCACACAATGGGGAATTCGGGGTGCACGAGT TTCCGACAGAGGCTGTACAACCAGACAGGAAACGGCCGACCAGATTCCAGCCTCGATTCCACCTATGCCTCCCAGTTGAAAACCAGGGGCTGCTCAACTC TGACCAGGTTCTCCTCACGAAGAATGAAGCATCCATGGAGTTGGTCAAGCAGTACGCTGAGAATAACGAGCTTTTCTTCCAGCAGTTTGCTAAGTCGATG GTTAAGATGGGAAATATCTCACCTTTGACTGGCTCCAAGGGAGAAATAAGGAAGAACTGCAGGAAGATGAATTAA
AA sequence Show only first row Show all	>Lus10028337 pacid=23166155 polypeptide=Lus10028337 locus=Lus10028337.g ID=Lus10028337.BGIv1.0 annot-version=v1.0 MWAMLRISVSFFRCSILKLEVSRGLPYCPMDSFTWLCILLIAVLLQVLCAAAVPGYIDFGRFNEPYSFHRGSGHVDFVQEFYNGDLVNCENSYDKLGRTA KVNLLCGSCLNGACRGGLGCICNFTYESSCRVIIDLSIPCEKPGHRVFQGFTVGFHPRTWEIVYDGLTQPGFEKPKQDFSFDTEQNAVSLYMTAVASLSA LVKKPIIEVHPGKGLEVRLSGSAAKATPPTTLSPSILIVEWECQKGRHTPYEINVTIPIDGYDPVQFFLTKMCGKLPPNTCLLHGIDALPGMTIISACLE TVSGMGQGYAYSRADEVNSGYASNASWDRTSVSASASGSAASSAPAQGNWRPGTFYDYSCPQAHQIVKSVVAKAVAKEPRMAASLLRLHFHDCFVKGCDA SILLDGGSGIATEKNSNPNRNSARGFEVIDDIKSALEKECPNKVSCADILTLAARDSTVLAGGPSWEVPLGRKDSRSASLSGSNNNIPAPNNTFQTILTK FKLQGLNTVDLVALSGSHALTRNPHNGEFGVHEFPTEAVQPDRKRPTRFQPRFHLCLPVENQGLLNSDQVLLTKNEASMELVKQYAENNELFFQQFAKSM VKMGNISPLTGSKGEIRKNCRKMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	0	1
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	1.0	0.9695
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028897 [exp]	1.7	0.9664
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001108 [exp]	2.2	0.9627
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	2.4	0.9600
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	2.4	0.9688
AT5G49960			unknown protein		Lus10013455 [exp]	3.2	0.9551
AT1G62560		FMOGS-OX3 ,FMO ...	flavin-monooxygenase glucosino...		Lus10024609 [exp]	3.7	0.9600
					Lus10014873 [exp]	4.9	0.9630
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	5.5	0.9490
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	6.5	0.9493

Compare expression of checked genes

Lus10028337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.