Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75420 637 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G19710 604 / 0 UDP-Glycosyltransferase superfamily protein (.1) AT1G52420 172 / 4e-46 UDP-Glycosyltransferase superfamily protein (.1) AT5G17760 117 / 6e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50940 116 / 1e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 109 / 4e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05380 103 / 7e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G15940 109 / 8e-25 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G17730 106 / 3e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G43910 104 / 9e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041786 [exp] 895 / 0 AT1G75420 647 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10024281 [exp] 647 / 0 AT1G75420 689 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10011469 [exp] 168 / 2e-44 AT1G52420 765 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037523 [exp] 163 / 2e-42 AT1G52420 770 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10037004 [exp] 118 / 3e-28 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 117 / 9e-28 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 114 / 2e-27 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 112 / 4e-26 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10024275 [exp] 100 / 7e-22 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118800 [exp] 719 / 0 AT1G75420 654 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G031300 [exp] 627 / 0 AT1G75420 644 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G019600 [exp] 125 / 1e-30 AT1G43910 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G119200 [exp] 123 / 7e-30 AT1G43910 530 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020900 [exp] 120 / 7e-29 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.008G177200 [exp] 117 / 6e-28 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G119132 [exp] 116 / 3e-27 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 114 / 1e-26 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.010G057900 [exp] 111 / 4e-26 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1) Potri.007G020500 [exp] 108 / 3e-25 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10028338 pacid=23166073 polypeptide=Lus10028338 locus=Lus10028338.g ID=Lus10028338.BGIv1.0 annot-version=v1.0 ATGGCAGCTAATCGTGGGAATAAAGCAGCAGAGATGGCCAAACACTCTCTCGGCTGGCCTTTGAAGAGATGGCTACTGGCCATGTTAATCATGCTATCAA TCTCGACTGTCATCGCTTTCTTTATCAGGGCCGCCTTCGATTCTTGTGATCGTCGCTTCGAAGTTGCTCAGAAATTGGTTCCTTCTTCCGGGAATGCGAA GACGCCTCCGGTTCCGATTACGAAGGCGCCTCCTCCCAGTCCCCTCAGCTTTATGAAATCGAAACGAGTGCTTTTGGTCTCCCATGAACTTTCCCTTTCT GGTGGGCCATTGTTGCTCATGGAACTAGCATTTCTACTAAGGAGTGTGGGTGCTGGAGTTTTCTGGATAACCGTCCAAAAACCTATGCAGACTGATGAGG TAATATACAGTTTGGAGCAGAAGATGTTGGTCCGAGGAGTGCAGGTAATATCAGCGAAGGGAGAGGAAGCTATAGTTGCAGCTCTCAAAGCTGATCTGGT TGTTCTGAATACTGCAGTTGCTGGGAAATGGCTGGATCCTGTTCTTAAGGAAAACGTTTCTCGAGTTCTTCCAAAGGTGTTGTGGTGGATCCATGAGATG CGGGGACACTATTTTAAACTGGATTATCTTAACCATCTGCCTTCGGTTGCTGGGGCTATGATTGATTCACATGTCACTGCAGAATATTGGAAGAATCGAA CTAAAGAGCATTTGCGGATTAACATGCCCATCACTTATGTTGTTCACCTTGGCAATAGCAAAGAGCTTATGGAGGTTGCGGAAGATAGTGTGGCAAAGAG GGTTTTGCGTGAGCACATCCGAGAGTCTCTTGGATTGCGAGATGAAGATTTATTGTTTGGCATTATAAACAGTGTTTCACGTGGTAAAGGGCAAGATCTG TTTCTACGTTCCTTCTACGAAAGTTTACAACTTATCCGCAACAAGAAGTTACAGGTGCCATCTGTGCATGCTGTAATTGTAGGGAGTGACATGGGTGCTC ACACCAAGTTCGAAACAGAATTGCGGAACTATGTAATCCAGAAAAGGATTGAACACCGTGTTCACTTTGTGAATAAGACCCTGACTGTTGCTCCTTATCT AGCTGCAATTGATGTTCTTGTTCAGAATTCTCAGGCCCGTGGAGAATGCTTCGGGAGGATAACCATTGAAGCCATGGCATTTCAGTTGCCTGTCCTGGGA ACTGCAGCTGGGGGCACAACAGAGATAGTTGTAAATGGAACTACTGGTTTGTTGCATCAAGTCGGGAAACAAGGGGTTTTGGCACTTGCGAAAAACATGG TGAAAGTTTCGACTCAGGTAGAGAGGAGGCTAACAATGGGGAAGAGAGGGTATCAGCGTGTTAAAGAGAGGTTCCTAGAGCATCACATGGCACATAGAAT CGCTGATGTGCTCAAGGACATACTGAGGAAGGCATCAAAGGATCATCAACATGATGAGATATGGTTGAGCTGTGGTGATGAGAGGATAATCATATTCACG ACCAACCATAAGGAGAAGTTGGACCCTGCATTGTTGAGGCCAGCAAGGATGGATGTTTATATCTACATGGGTCATTGCACTTTTGCTGGATTCAAATTGC TAGCGAACGAGTATCTTGGGGTGAAGGATCACGTGCTTTATGACCAAATTGAGAGTATGATTCAGGAGAAACCGGCTACTCCGGCCATTGAACCAAGTGT TGGATGA
AA sequence Show only first row Show all	>Lus10028338 pacid=23166073 polypeptide=Lus10028338 locus=Lus10028338.g ID=Lus10028338.BGIv1.0 annot-version=v1.0 MAANRGNKAAEMAKHSLGWPLKRWLLAMLIMLSISTVIAFFIRAAFDSCDRRFEVAQKLVPSSGNAKTPPVPITKAPPPSPLSFMKSKRVLLVSHELSLS GGPLLLMELAFLLRSVGAGVFWITVQKPMQTDEVIYSLEQKMLVRGVQVISAKGEEAIVAALKADLVVLNTAVAGKWLDPVLKENVSRVLPKVLWWIHEM RGHYFKLDYLNHLPSVAGAMIDSHVTAEYWKNRTKEHLRINMPITYVVHLGNSKELMEVAEDSVAKRVLREHIRESLGLRDEDLLFGIINSVSRGKGQDL FLRSFYESLQLIRNKKLQVPSVHAVIVGSDMGAHTKFETELRNYVIQKRIEHRVHFVNKTLTVAPYLAAIDVLVQNSQARGECFGRITIEAMAFQLPVLG TAAGGTTEIVVNGTTGLLHQVGKQGVLALAKNMVKVSTQVERRLTMGKRGYQRVKERFLEHHMAHRIADVLKDILRKASKDHQHDEIWLSCGDERIIIFT TNHKEKLDPALLRPARMDVYIYMGHCTFAGFKLLANEYLGVKDHVLYDQIESMIQEKPATPAIEPSVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75420			UDP-Glycosyltransferase superf...		Lus10028338 [exp]	0	1
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	6.0	0.9110
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10011329 [exp]	7.5	0.8710
AT1G75420			UDP-Glycosyltransferase superf...		Lus10041786 [exp]	12.6	0.8162
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10012239 [exp]	13.9	0.8946
AT5G49960			unknown protein		Lus10035805 [exp]	14.8	0.8918
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	20.3	0.8780
AT1G78922			unknown protein		Lus10035715 [exp]	20.4	0.8208
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Lus10003039 [exp]	22.0	0.8874
					Lus10015758 [exp]	23.0	0.8840
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	23.1	0.8837

Compare expression of checked genes

Lus10028338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.