Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66380 357 / 9e-125 ATFOLT1 folate transporter 1 (.1) AT2G47490 119 / 1e-31 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G25380 112 / 5e-29 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT3G53940 92 / 1e-21 Mitochondrial substrate carrier family protein (.1) AT3G54110 91 / 2e-21 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT2G37890 86 / 3e-19 Mitochondrial substrate carrier family protein (.1) AT4G01100 84 / 2e-18 ADNT1 adenine nucleotide transporter 1 (.1.2) AT4G39460 84 / 2e-18 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT5G48970 82 / 9e-18 Mitochondrial substrate carrier family protein (.1) AT2G39970 81 / 2e-17 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041789 [exp] 129 / 7e-37 AT5G66380 111 / 2e-29 folate transporter 1 (.1) Lus10034104 [exp] 121 / 2e-32 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10001463 [exp] 117 / 3e-31 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10014839 [exp] 98 / 1e-23 AT2G39970 481 / 5e-172 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10009886 [exp] 98 / 1e-23 AT2G39970 484 / 2e-173 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Lus10003041 [exp] 95 / 2e-23 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10024344 [exp] 87 / 1e-19 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 86 / 2e-19 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 81 / 1e-17 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019000 [exp] 370 / 8e-130 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.010G121500 [exp] 129 / 5e-35 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.002G200900 [exp] 127 / 9e-35 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.014G125600 [exp] 125 / 6e-34 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.008G123700 [exp] 117 / 9e-31 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.006G095500 [exp] 90 / 8e-21 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.010G192600 [exp] 88 / 5e-20 AT2G39970 460 / 7e-164 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 88 / 5e-20 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 86 / 2e-19 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.016G110100 [exp] 83 / 2e-18 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10028339 pacid=23166165 polypeptide=Lus10028339 locus=Lus10028339.g ID=Lus10028339.BGIv1.0 annot-version=v1.0 ATGGTGGCGCAAGATTCACAGAACCAGAACAACTCGGAAGCAAATTGGCAATGGCAGAACGCCACAGCCGGTGCTGTGGCTGGGTTCTCCACCGTCGCTG CTATGCATCCTCTTGACGTCGTCCGGACTAGGTTTCAAGTTAACGATGGTCGAGTCTCCAGCCTCCCGACTTACAGGAGCACTGCCCACGCTATTTATAC CATTGCTCGCTTAGAGGGACTCAGAGGGCTTTATGCAGGGTTCTCTCCAGCCGTCCTTGGCTCTACCGTTGCATGGGGTCTTTATTTCTTCTTCTATAGC AGAGCTAAACAAAGGTATTCAAAGGACAGGACTGAAAGCCTGAGCCCTCTTCTTCATCTTGCATCTGCTGCAGAAGCTGGAGGCTTGGTTTGCCTGTGCA CAAATCCCATCTGGCTGGTAAAGACGAGGTTGCAATTACAGACCCATCATCATCAATCCCAGCCATACTCTGGACTTTATGATGCATTTAAGACAATAAT GAGAGAAGAAGGATGGAGGGCTCTTTATAAAGGACTTGGTCCTGGGCTCTTTTTGGTTTCTCATGGTGCCATCCAGTTCACTGCATACGAGGAATTACGC AAACTAATTCTTCACCACAGATCTAAAGTGACAAAAGGCCACCATGATAGCGCAGACATTAATTTGCTGAATTCAGTTGACTACGCTGTCCTCGGTGGTT CTTCGAAACTTTCGGCCATTCTCCTGACGCATCCATTTCAGGTTGTTCGAGCTCGTTTGCAGGTTTGGCTTGGTCAAACAGGTTGA
AA sequence Show only first row Show all	>Lus10028339 pacid=23166165 polypeptide=Lus10028339 locus=Lus10028339.g ID=Lus10028339.BGIv1.0 annot-version=v1.0 MVAQDSQNQNNSEANWQWQNATAGAVAGFSTVAAMHPLDVVRTRFQVNDGRVSSLPTYRSTAHAIYTIARLEGLRGLYAGFSPAVLGSTVAWGLYFFFYS RAKQRYSKDRTESLSPLLHLASAAEAGGLVCLCTNPIWLVKTRLQLQTHHHQSQPYSGLYDAFKTIMREEGWRALYKGLGPGLFLVSHGAIQFTAYEELR KLILHHRSKVTKGHHDSADINLLNSVDYAVLGGSSKLSAILLTHPFQVVRARLQVWLGQTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Lus10028339 [exp]	0	1
AT2G22010		RKP	related to KPC1 (.1.2)		Lus10035857 [exp]	12.1	0.7519
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	15.0	0.7641
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	17.1	0.7699
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	17.7	0.7500
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	27.3	0.7613
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10022423 [exp]	28.3	0.7417
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	29.3	0.7631
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10018479 [exp]	31.6	0.7567
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	38.4	0.6992
AT5G36930			Disease resistance protein (TI...		Lus10007722 [exp]	42.3	0.6634

Compare expression of checked genes

Lus10028339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.