Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51000 421 / 8e-149 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 319 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 315 / 5e-107 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 291 / 1e-96 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 274 / 1e-90 ATSEH soluble epoxide hydrolase (.1) AT4G15955 264 / 5e-87 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT2G26750 264 / 7e-87 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 62 / 1e-10 alpha/beta-Hydrolases superfamily protein (.1) AT5G53050 54 / 4e-08 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G36530 48 / 5e-06 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041790 [exp] 555 / 0 AT3G51000 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10010293 [exp] 316 / 4e-107 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 303 / 7e-102 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 297 / 1e-99 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 295 / 1e-98 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 288 / 2e-96 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 280 / 8e-93 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 275 / 4e-91 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 272 / 5e-90 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018900 [exp] 501 / 3e-180 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 322 / 1e-109 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 321 / 3e-109 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010900 [exp] 316 / 3e-107 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 315 / 8e-107 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 302 / 7e-102 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 296 / 1e-99 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 282 / 1e-93 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 218 / 4e-69 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 211 / 2e-66 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10028340 pacid=23166010 polypeptide=Lus10028340 locus=Lus10028340.g ID=Lus10028340.BGIv1.0 annot-version=v1.0 ATGGAAGCGAGAATAGAAGACGATGTGAATCACCAGAGAATAAAAACAAACGGGATATGGTTACATGTAGTGGAGAAAGGGAGTAGTAGTGACCCTCTGG TTCTTCTCCTCCATGGCTTCCCAGATTTCTGGTATTCATGGCGTCACCAGATCACCTTCTTGGCCGACCGTGGTTACCACGTCGTCGCTCCTGACCTCAG AGGTTGCGGCGACTCTGACGCTCCCATCAGCCATAGTTCTTACTCGCTTCTGCACATTGTAGGCGACATTGTTGGCCTCCTTGACCATTTTGGAGAACAG CAGGTCACTTCTCTCTCTGCCTTTGTCGTAGGGCATGACTGGGGAGCTCTAGCTGCTTGGTATCTAAGCATCTTCAGGCCTGAGAGGGTGAAGGGGTTGA TTACACTTTCTGTTCCATTCTATCAGAGAAACCCTGAGGCTAAAGTTATTGAATCCTTCAAAAGGATATTTGGAGATGGGTTTTACATCTGTCAGTTTCA GGAACCGGGAAGAGCAGAGCAGGCTTTCGCGAGATACGATTACCTGACAGTGATGAAGAAGTTCTTGCTGATAAACAAGGCAGACGACAACTTGGTGGCT CCTTTGGGGATGGAAATCATCGATTACTTGGAGACACCAGCAGTTTTGCCACCATGGATCACTGAAGATGAACTGCAAGTCTATGCCGATAAGTTCCAGG AATCTGGTTTCACTGGTCCTCTCAACTACTATCGTGCCATGGACCTGAACTGGGAGATCTCAGCACCCTGGCAAGGAGCAAAAGTTACAGTTCCAACAAA GTTCATGGTTGGAAATGAAGACATAGGTTTCAGGACTTCAGGTACCAAGCAATACATAGAAGGAGATACCTTCAGGAGCTTTGTTCCAGATCTTGAAGTT GTTGTTCTAGATGGTCACCACTTCATACATCAAGAGAAAGCTCAACAAGTTTCAGAAGAAATTGCTGCCTTTCTCCATAAGCATTCCTCACAATGA
AA sequence Show only first row Show all	>Lus10028340 pacid=23166010 polypeptide=Lus10028340 locus=Lus10028340.g ID=Lus10028340.BGIv1.0 annot-version=v1.0 MEARIEDDVNHQRIKTNGIWLHVVEKGSSSDPLVLLLHGFPDFWYSWRHQITFLADRGYHVVAPDLRGCGDSDAPISHSSYSLLHIVGDIVGLLDHFGEQ QVTSLSAFVVGHDWGALAAWYLSIFRPERVKGLITLSVPFYQRNPEAKVIESFKRIFGDGFYICQFQEPGRAEQAFARYDYLTVMKKFLLINKADDNLVA PLGMEIIDYLETPAVLPPWITEDELQVYADKFQESGFTGPLNYYRAMDLNWEISAPWQGAKVTVPTKFMVGNEDIGFRTSGTKQYIEGDTFRSFVPDLEV VVLDGHHFIHQEKAQQVSEEIAAFLHKHSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10028340 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	2.2	0.9658
AT4G17900			PLATZ transcription factor fam...		Lus10000482 [exp]	2.4	0.9556
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	5.0	0.9531
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	5.3	0.9535
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	6.5	0.9579
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	7.7	0.9472
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	8.8	0.9520
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10016461 [exp]	11.0	0.9508
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	11.2	0.9423
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	11.2	0.9529

Compare expression of checked genes

Lus10028340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.