Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75440 250 / 8e-87 UBC16 ubiquitin-conjugating enzyme 16 (.1) AT5G42990 242 / 1e-83 UBC18 ubiquitin-conjugating enzyme 18 (.1) AT1G45050 240 / 6e-83 ATUBC2-1, UBC15 Arabidopsis thaliana ubiquitin-conjugating enzyme 15, Ubiquitin-conjugating enzyme family protein (.1) AT4G36410 232 / 2e-79 UBC17 ubiquitin-conjugating enzyme 17 (.1) AT5G41700 74 / 1e-17 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G08690 74 / 2e-17 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT2G16740 73 / 5e-17 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT5G53300 73 / 6e-17 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G56150 72 / 8e-17 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT1G78870 72 / 8e-17 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041791 [exp] 227 / 3e-77 AT1G75440 246 / 9e-85 ubiquitin-conjugating enzyme 16 (.1) Lus10032352 [exp] 76 / 3e-18 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10033937 [exp] 76 / 3e-18 AT5G53300 300 / 2e-106 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Lus10009422 [exp] 75 / 1e-17 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10028700 [exp] 75 / 1e-17 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10027570 [exp] 75 / 1e-17 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10038827 [exp] 75 / 1e-17 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014942 [exp] 75 / 1e-17 AT1G64230 301 / 3e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10039323 [exp] 75 / 1e-17 AT1G64230 303 / 8e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G030800 [exp] 266 / 2e-93 AT5G42990 251 / 9e-87 ubiquitin-conjugating enzyme 18 (.1) Potri.005G118600 [exp] 263 / 4e-92 AT1G75440 296 / 1e-104 ubiquitin-conjugating enzyme 16 (.1) Potri.007G018700 [exp] 261 / 5e-91 AT1G75440 295 / 3e-104 ubiquitin-conjugating enzyme 16 (.1) Potri.005G232100 [exp] 252 / 2e-87 AT5G42990 256 / 1e-88 ubiquitin-conjugating enzyme 18 (.1) Potri.001G094900 [exp] 76 / 3e-18 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.012G033000 [exp] 76 / 3e-18 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.015G023300 [exp] 76 / 3e-18 AT5G53300 302 / 1e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.008G053800 [exp] 74 / 2e-17 AT5G59300 264 / 4e-91 ARABIDOPSIS THALIANA UBIQUITIN CARRIER PROTEIN 7, ubiquitin carrier protein 7 (.1) Potri.019G131400 [exp] 73 / 3e-17 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 73 / 4e-17 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10028341 pacid=23166107 polypeptide=Lus10028341 locus=Lus10028341.g ID=Lus10028341.BGIv1.0 annot-version=v1.0 ATGACCAGTTCCTCCGCCACCGCTCGCAAGGTCAATCCTCCCACTGGATTCAAACACAAAGTCACCGACAATCTCCAGAGGTGGGTGATTGAAGTAAATG GAGCTCCTGGAACCCTCTATGCTAATGAAATGTACCAGCTCCAAGTTGATTTCCCTGAGCATTACCCAATGGAAGCTCCCCAGGTTATATTTCTTCACCC AGCTCCACTGCACCCTCACATTTACAGCAATGGCCATATTTGTTTAGATATATTATACGATTCTTGGTCACCGGCTATGACTGTTAGTTCTGTGTGTATC AGCATCCTTTCAATGCTGTCAAGCTCAACTGTTAAGCAACGCCCTGAAGACAATGATCGCTATGTGAAGAACTGCCGTAACGGAAGATCTCCGAAGGAGA CCAGGTGGTGGTTCCATGACGACAAGGTGTAA
AA sequence Show only first row Show all	>Lus10028341 pacid=23166107 polypeptide=Lus10028341 locus=Lus10028341.g ID=Lus10028341.BGIv1.0 annot-version=v1.0 MTSSSATARKVNPPTGFKHKVTDNLQRWVIEVNGAPGTLYANEMYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCI SILSMLSSSTVKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Lus10028341 [exp]	0	1
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029086 [exp]	2.4	0.8798
AT1G61780			postsynaptic protein-related (...		Lus10007644 [exp]	2.4	0.8808
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	14.8	0.8693
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10021746 [exp]	17.5	0.8057
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	19.1	0.8406
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	20.6	0.7844
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	31.9	0.8223
AT2G25280			unknown protein		Lus10001925 [exp]	35.0	0.8131
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	38.7	0.8242
AT5G16110			unknown protein		Lus10033560 [exp]	46.3	0.8136

Compare expression of checked genes

Lus10028341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.