Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36400 788 / 0 D2HGDH D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) AT5G06580 168 / 5e-45 FAD-linked oxidases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041792 [exp] 948 / 0 AT4G36400 682 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Lus10012289 [exp] 160 / 5e-42 AT5G06580 825 / 0.0 FAD-linked oxidases family protein (.1) Lus10015987 [exp] 158 / 1e-41 AT5G06580 777 / 0.0 FAD-linked oxidases family protein (.1) Lus10026471 [exp] 46 / 8e-05 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10005317 [exp] 45 / 0.0001 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 43 / 0.0008 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018600 [exp] 842 / 0 AT4G36400 817 / 0.0 D-2-hydroxyglutarate dehydrogenase, FAD-linked oxidases family protein (.1.2) Potri.016G064800 [exp] 159 / 5e-42 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1) Potri.016G040300 [exp] 55 / 1e-07 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF02913 [flax] [poplar] FAD-oxidase_C FAD linked oxidases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028342 pacid=23166079 polypeptide=Lus10028342 locus=Lus10028342.g ID=Lus10028342.BGIv1.0 annot-version=v1.0 ATGATGACGCCGGCTATGACGGAGAAGTATAGAGCAGTGGTTCGCTTGCTCAGGAAAAATCCGAGATCATTTCATGATCGCCGATTCATCCCCCAAGAGC AGTTTTCTGGCGGCGGATTTGCTGCTTTTGGTTATAACGATTGGTTTGAAGCAGGACGTGATCAATGCGTATCTCATCGCGGATGCCAAAAGCGGGGGTT ATGGAATTCTGCGCGATCTTTTGCTGGACACTGTGTAGCTCCTCTTTCCAATTTTATGGACCGAGGATTCATGAGAGATTACTCCATGTATCAGCGGAGA AGCTTTGGTGCGGTTGCTTCTGAAATTCAGAGAAGCTCCAAGTTCGCCACGTTGAATTCAGATGACTTGTTGTACTTCAAGGAGATATTGGGTGAAAAAA ATGTGGTTCAGGATGAGAGGCTAGAAGCTGCAAATAGTGATTGGATGCACAAATACAAAGGATCGAGTAGGCTTCTTTTGCTTCCCAAGTCCACAGATGA GGTTTCGAAAGTTCTTAAATATTGCAATTCAAGGTGCTTAGCTGTTGTTCCACAAGGTGGAAATACTGGACTTGTGGGCGGCAGTGTGCCAGTATTTGAT GAGGTGATCATTAATATGGCTTTGATGAATAAAGTAATCTCTTTTGACGAGATCAGTGGCATACTAGTGTGTGAAGCTGGATGCATACTTGAGGATCTGA TCTCCTACCTCGATAACCAGGGATTTATTATGCCACTCGACTTAGGTGCAAAAGGAAGCTGTCAAATTGGTGGGAACGTGGCAACCAATGCTGGGGGTTT GCGTCTTGTTCGGTATGGTTCACTTCATGGGACTGTACTTGGTCTGGAGACTGTACTTGCAAATGGCGATGTATTGGACATGCTTGGAACATTACGGAAA GATAATACTGGTTATGACTTGAAACATTTGTTTATAGGAAGTGAAGGCTCCTTAGGAATTATTACTAAAGTTTCAATACTCACGCCTCCAAAGCTCTCTT CAGTTAATATAGCTTTCCTTGCTTGTGAAGATTATCTGAGCTGTCAGAAACTTCTACTGGAAGCAAAGAGGAATCTTGGGGAGATTTTATCTGCCTTTGA ATTTTTGGACAGTGTCGCAATGGATGTGGTTCTAAACAATCTAGATGGTGCAAGAAACCCACTTGCTCCCTCAAAACACAACTTCTATGTTCTGATTGAG ACAACAGGCAGTGAAGAATCCTATGACAAAGAGAAGATTGAGAAATTCCTACTTGGATCAATGGAATCTGGTTTAGTTTCTGATGGCGTTCTTGCACAAG ATATAAACCAAGCTTCTGCATTCTGGCATTTACGTGAGGGCATACCTGAATCATTGCAGCGAGCTGGCGCTGTTTACAAATATGATCTGTCCTTGCCGGT TGAGAAAATGTATGATATTGTAGAAGAAATGAGAGCGAGATTAGGTGATTCGGTGAAAGTGGTTGGATATGGTCATCTTGGTGACGGAAATTTACATCTC AATGTTTCAGCCCAGAGATACGATGATGCAATATTAGCACAAATTGAGCCTTTTGTCTATGAATGGACATCTAAGCACCGTGGGAGTATAAGCGCAGAGC ATGGCGTTGGACTGATGAAGGCTAACAAAATATTCTACAGCAAATCACCTGAAACTGTTCAACTGATGGCATCCATTAAGAAATTGCTGGATCCAAATAC CATACTCAACCCGTACAAAGTTCTTCCTCACTCGCTCATGTCTTACAACTAA
AA sequence Show only first row Show all	>Lus10028342 pacid=23166079 polypeptide=Lus10028342 locus=Lus10028342.g ID=Lus10028342.BGIv1.0 annot-version=v1.0 MMTPAMTEKYRAVVRLLRKNPRSFHDRRFIPQEQFSGGGFAAFGYNDWFEAGRDQCVSHRGCQKRGLWNSARSFAGHCVAPLSNFMDRGFMRDYSMYQRR SFGAVASEIQRSSKFATLNSDDLLYFKEILGEKNVVQDERLEAANSDWMHKYKGSSRLLLLPKSTDEVSKVLKYCNSRCLAVVPQGGNTGLVGGSVPVFD EVIINMALMNKVISFDEISGILVCEAGCILEDLISYLDNQGFIMPLDLGAKGSCQIGGNVATNAGGLRLVRYGSLHGTVLGLETVLANGDVLDMLGTLRK DNTGYDLKHLFIGSEGSLGIITKVSILTPPKLSSVNIAFLACEDYLSCQKLLLEAKRNLGEILSAFEFLDSVAMDVVLNNLDGARNPLAPSKHNFYVLIE TTGSEESYDKEKIEKFLLGSMESGLVSDGVLAQDINQASAFWHLREGIPESLQRAGAVYKYDLSLPVEKMYDIVEEMRARLGDSVKVVGYGHLGDGNLHL NVSAQRYDDAILAQIEPFVYEWTSKHRGSISAEHGVGLMKANKIFYSKSPETVQLMASIKKLLDPNTILNPYKVLPHSLMSYN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	0	1
AT3G14910			unknown protein		Lus10043078 [exp]	3.0	0.9279
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	3.5	0.9332
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	3.5	0.9166
AT5G06830			unknown protein		Lus10012023 [exp]	4.8	0.9035
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	4.9	0.9244
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	5.5	0.9133
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	5.7	0.9282
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	6.3	0.9197
AT5G10650			RING/U-box superfamily protein...		Lus10026226 [exp]	7.3	0.9082
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	7.5	0.9147

Compare expression of checked genes

Lus10028342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.