Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36380 640 / 0 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 483 / 1e-167 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G05690 332 / 6e-109 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT3G50660 315 / 6e-102 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT5G38970 266 / 1e-83 ATBR6OX, CYP85A1, BR6OX1 brassinosteroid-6-oxidase 1 (.1.2.3) AT1G73340 265 / 1e-82 Cytochrome P450 superfamily protein (.1) AT1G12740 261 / 1e-81 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 253 / 2e-78 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT4G19230 243 / 7e-75 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT3G19270 238 / 1e-72 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041794 [exp] 923 / 0 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 342 / 1e-112 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 338 / 3e-111 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10006152 [exp] 284 / 2e-91 AT3G13730 378 / 2e-128 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Lus10024495 [exp] 280 / 1e-88 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10016065 [exp] 273 / 2e-85 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10030404 [exp] 261 / 6e-83 AT5G05690 531 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028297 [exp] 253 / 1e-80 AT5G05690 472 / 2e-168 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10005075 [exp] 256 / 7e-80 AT5G38970 644 / 0.0 brassinosteroid-6-oxidase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018400 [exp] 659 / 0 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Potri.001G200100 [exp] 520 / 0 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.003G038200 [exp] 518 / 0 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.010G189800 [exp] 345 / 3e-114 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.008G067500 [exp] 345 / 5e-114 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.007G026500 [exp] 312 / 6e-101 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 306 / 6e-99 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G156800 [exp] 277 / 6e-88 AT3G30180 561 / 0.0 brassinosteroid-6-oxidase 2 (.1) Potri.014G171700 [exp] 271 / 2e-85 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G109100 [exp] 271 / 3e-85 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028345 pacid=23166026 polypeptide=Lus10028345 locus=Lus10028345.g ID=Lus10028345.BGIv1.0 annot-version=v1.0 ATGCTGAATTTGGTGGAGAAGGAATCTGAAGGGATGTGGTGGGTAGGATCAGTGGTTCTCGCCGTCTTGTTTGGAGCTGCTCTTCCACTCTATCGGTGGC GGCGCCGCCTAGCCACGACGGCGGCGAGGGACGCCTCGTCGTCTTCGGAGGCCGTTGTGCCGAAAGGGAATTTGGGATGGCCTTTGATCGGGGAGACTCT TGACTTTATCGCCTGCGGGTACACTTCTCGCCCTGTTTCTTTCATGGACACTCGCAAATCCCTATATGGGAATGTGTTCAAATCGAACATACTGGGAACT CCAATAATCGTATCGACCGATCCGGAAGTGAACAAGGTAGTGTTACAGAACCATGGAAACAACTCCTTCATCCCGGCTTATCCTAAATCCATCCGCGAAA TATTCGGCAAAGAGTCCATCCTACAAACCAACGGGCCTATGCAGAAGAAAGTCCACGGCTTGATCGGTGGGTTCTTGAGATCCCCTCAGTTCAAAGCCAG AATCGCCAAGGACATCGAGGACTCTGTCAAGTTCACTTTGGACACTTGGAAGGACTTCCCCGTCGTTTATGTCCAGGATGAAATAAAAAAGATGACGTTC AAAGTGTTGGTGAAAGCTCTGATTAGCGTCGGGCCAGGGGCAGATTTGGAATTCATGAAATCTGAATTCGAGGAGCTTATCAAAGGCTTAATCTGCTTCC CCATCAAAGTCCCTGGAACCACTCTCTACAAGTCATTGAAGGCGAGAGAGAGGTTGTTGAAGTTTGTGAGGAGGAAGGTGGACGAAAGGAAAAGCAAAAC GACAACGGACGAGGGTCCACGGGATGCGGTGGACGTGCTCCTAGGGGAAAAAGAGGAGAAACAACAACAACAACAACAACTGCTGTCGTTGGATTTCATA AGCGGGAACGTGTTGGAGATGATGATCCCAGGGGAAGAGACGGTGCCGACGGCGATGACGTTAGCTGTCAAGTTCTTGAGTGACTACCCACGCGCTTTAG CCCAACTAACGGAGGAGAACTTGGTTCTGAAGAGGCAGAAGGAAGAGTTGGGTGAGGAGTATAAGTGGACTGACTACGTGTCCTTGCCATTTACTCAGAA TGTGATCAGTGAGACACTTAGAATGGCAAATATCATTAATGGGGTTTGGAGGAAAGCTCTAAAAAATGTGGAAATTAAAGGACATTTGATTCCGAAAGGA TGGTGTGTTTTGGCATCTTTCACCTCTGTTCATATGAATGAAGATAACTACCAACACCCTTACGAATTTAATCCATGGAGATGGGAGCAAAAGGGAGCAT CAGTTAACAACAATTGCTACACACCATTTGGTGGAGGGCAAAGGCTATGCCCTGGTTTGGAGCTGTCCAGGCTTGAAATCTGTATTTTCCTTCACCACCT AGTCACCACTTACAAATGGAGTGCTGAGAAGGATGACATCGTCTACTTTCCAACTGTGAAGATGAAGAGGAAGATGCCCATCACTGTCACACCTTTTAAT ACATAA
AA sequence Show only first row Show all	>Lus10028345 pacid=23166026 polypeptide=Lus10028345 locus=Lus10028345.g ID=Lus10028345.BGIv1.0 annot-version=v1.0 MLNLVEKESEGMWWVGSVVLAVLFGAALPLYRWRRRLATTAARDASSSSEAVVPKGNLGWPLIGETLDFIACGYTSRPVSFMDTRKSLYGNVFKSNILGT PIIVSTDPEVNKVVLQNHGNNSFIPAYPKSIREIFGKESILQTNGPMQKKVHGLIGGFLRSPQFKARIAKDIEDSVKFTLDTWKDFPVVYVQDEIKKMTF KVLVKALISVGPGADLEFMKSEFEELIKGLICFPIKVPGTTLYKSLKARERLLKFVRRKVDERKSKTTTDEGPRDAVDVLLGEKEEKQQQQQQLLSLDFI SGNVLEMMIPGEETVPTAMTLAVKFLSDYPRALAQLTEENLVLKRQKEELGEEYKWTDYVSLPFTQNVISETLRMANIINGVWRKALKNVEIKGHLIPKG WCVLASFTSVHMNEDNYQHPYEFNPWRWEQKGASVNNNCYTPFGGGQRLCPGLELSRLEICIFLHHLVTTYKWSAEKDDIVYFPTVKMKRKMPITVTPFN T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	0	1
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	2.4	0.8882
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	3.0	0.8744
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	3.2	0.8686
AT5G02580			Plant protein 1589 of unknown ...		Lus10025300 [exp]	3.5	0.8731
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10002960 [exp]	3.7	0.8580
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	4.2	0.8584
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	4.7	0.8396
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	6.0	0.8830
AT5G12900			unknown protein		Lus10031249 [exp]	7.1	0.8211
AT4G37030			unknown protein		Lus10011021 [exp]	21.0	0.8486

Compare expression of checked genes

Lus10028345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.