Plant FIBer expression Database

Lus10028346 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51010 99 / 3e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041795
[exp]
249 / 3e-85 AT3G51010 175 / 5e-56 unknown protein
Lus10026320
[exp]
235 / 1e-79 AT3G51010 176 / 2e-56 unknown protein
Lus10042347
[exp]
227 / 3e-76 AT3G51010 170 / 5e-54 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G018300
[exp]
95 / 3e-25 AT3G51010 94 / 6e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10028346 pacid=23166168 polypeptide=Lus10028346 locus=Lus10028346.g ID=Lus10028346.BGIv1.0 annot-version=v1.0
ATGGGATTTGTAGCTTTCAGAAGTATCGTTCGGCCGCTGGCTAGGGCACTAACGTCCGGCGCCTCCTCTTCTTACTCGACATCGTTGCTGGGAAAAGCTC
CGTTTCCGCGATCCAAGTGGCGATTGGCTCTCATCCCTCAGGCTGCACCAGTGTCCCAGCTATTGCGCCATTTCAGTTTCTTTTCAGAGTCTGGTTACGA
CAGGTTAACAGACACGAGGTTGCCAAAGCGCCGGCCGCTCGACAAACCTCGCCGGAAAAGAGCTGGCTTGAGACCTTCTGGAGCATTTGCTTGGGTTAAG
TATGAGGCTGGAGAGCCGATTAAGCCCAGTAACCCTAATGAAGGAAGTGTTAAGAAAAGGAATGAGAAGAAACGTAGAATGTTGCACCGAGAATTCGTAA
AGTCTGAGGCGAAGAAGAGGAAAGCTCTGTTACAGGCAGCTAACAGGAGGAAAATGGCCGCAAGAGTGGACCGTAAAATGGCTGCTGTGGCTAGGGATAG
AGCATGGGCAGAAAGATTAGCTGAACTGCAACGACTCGAAGCGGAAAAGAAAAACTCCACATCTTAG
AA sequence
>Lus10028346 pacid=23166168 polypeptide=Lus10028346 locus=Lus10028346.g ID=Lus10028346.BGIv1.0 annot-version=v1.0
MGFVAFRSIVRPLARALTSGASSSYSTSLLGKAPFPRSKWRLALIPQAAPVSQLLRHFSFFSESGYDRLTDTRLPKRRPLDKPRRKRAGLRPSGAFAWVK
YEAGEPIKPSNPNEGSVKKRNEKKRRMLHREFVKSEAKKRKALLQAANRRKMAARVDRKMAAVARDRAWAERLAELQRLEAEKKNSTS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51010 unknown protein Lus10028346
[exp]
0 1
AT2G44050 COS1 coronatine insensitive1 suppre... Lus10018133
[exp]
3.5 0.7074
AT1G19580 GAMMACA1 ,GAMMA... gamma carbonic anhydrase 1 (.1... Lus10001959
[exp]
8.7 0.7672
AT5G42790 ARS5, ATPSM30, ... ARSENIC TOLERANCE 5, proteasom... Lus10024269
[exp]
9.3 0.7621
AT5G13490 AAC2 ADP/ATP carrier 2 (.1.2) Lus10016418
[exp]
12.0 0.6869
AT4G02450 HSP20-like chaperones superfam... Lus10026136
[exp]
18.1 0.6879
AT3G14067 Subtilase family protein (.1) Lus10013154
[exp]
20.5 0.6935
AT3G06720 IMPA1, IMPA-1, ... importin alpha isoform 1 (.1.2... Lus10037722
[exp]
23.3 0.7211
AT4G31300 PBA1 N-terminal nucleophile aminohy... Lus10020180
[exp]
34.8 0.6847
AT1G22450 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cyto... Lus10008716
[exp]
38.9 0.6481
AT2G05840 PAA2 20S proteasome subunit PAA2 (.... Lus10039932
[exp]
41.6 0.6451

Lus10028346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.