Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G11520 397 / 2e-134 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT4G00330 288 / 3e-93 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT5G58940 284 / 8e-91 CRCK1 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) AT3G46290 207 / 1e-58 HERK1 hercules receptor kinase 1 (.1) AT5G59700 206 / 2e-58 Protein kinase superfamily protein (.1) AT1G70460 203 / 6e-58 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT2G39360 202 / 4e-57 Protein kinase superfamily protein (.1) AT1G10620 201 / 6e-57 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70450 192 / 2e-56 Protein kinase superfamily protein (.1) AT1G30570 198 / 2e-55 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041796 [exp] 623 / 0 AT2G11520 498 / 2e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10028613 [exp] 499 / 7e-174 AT2G11520 540 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018913 [exp] 411 / 7e-139 AT2G11520 520 / 0.0 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10018828 [exp] 298 / 1e-96 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 296 / 2e-94 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10036376 [exp] 291 / 6e-94 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10014760 [exp] 281 / 3e-84 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10040704 [exp] 266 / 5e-84 AT5G58940 418 / 3e-143 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Lus10018203 [exp] 267 / 8e-80 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124600 [exp] 494 / 2e-172 AT2G11520 502 / 6e-175 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.006G064200 [exp] 489 / 1e-170 AT2G11520 508 / 2e-177 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Potri.014G087200 [exp] 295 / 2e-95 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 290 / 2e-93 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.009G041900 [exp] 273 / 7e-87 AT5G58940 412 / 3e-141 calmodulin-binding receptor-like cytoplasmic kinase 1 (.1) Potri.009G026600 [exp] 208 / 5e-59 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.010G213200 [exp] 207 / 8e-59 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.017G096400 [exp] 199 / 1e-58 AT3G51550 451 / 6e-151 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.001G234200 [exp] 205 / 5e-58 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.004G232500 [exp] 203 / 6e-57 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10028347 pacid=23165968 polypeptide=Lus10028347 locus=Lus10028347.g ID=Lus10028347.BGIv1.0 annot-version=v1.0 ATGTGTTGTGGTCTGCTATGCCCTTGTATTTACAAGAGAAGAAAGGCAACTTCCCGCAATGTTCATTCCAAGGATCACGTTTCAATGGAGTCGGCTTCTT GTCTAGATCAAGCTCCTTCTGTCCATGAAAAAGTGCCTGCGAGCCCACTTCGTGTTCCACCTAGTCCTTCTAGATTTTCTCCATCCCCTAAACTTTCTAG ACTTGGGTCTGTTCATCTCAACCTGAGTCAAGTTTCCAGAGCTACGCGTCATTTTTCCGAGTCACTGAAGATTGGGGAAGGAGGCTTTGGATGCGTGTAC AAAGCGCAACTGGACGATGGGCAGATAGTTGCAATAAAACGAGCCAAAAAGGAACATTTTGAGAACTTGCGAGCAGAATTCAGCAGTGAAGTTGAACTTC TGGCAAAAATCGATCACCGGAATCTGGTGAAGTTACTTGGTTATGTAGATAAGGGACATGAACGCCTTATCATCACCGAGTACGTCCCAAATGGTACCCT TAGAGAACATTTGGATGAAAAACAAATCATCCATCGGGATGTGAAATCATCGAACATTCTCTTGACGGAGAGCATGCGAGCGAAGGTTGCTGATTTCGGA TTTGCGAGGTTGGGTCCTGTGGAATCTGACCAAACTCATATCTCTACCAAAGTGAAAGGGACCATAGGTTACCTCGACCCCGAATACATGAAGACCTATC AACTCACTCCCAAGAGCGATGTCTACTCATTCGGGATATTACTGTTAGAAATTATGACAGGTCGTCGACCTGTGGAGCTAAAGAGACCTGCTCCAGAGCG GGTGACCCTTAGATGGGCATTCAAGAAGTACAATGATAGTGCTGTGGTGGAGATGGTGGATCCATTAATGGGAGAAGTTGTGGATGCAGAAATATTGGTG AAGATGGTGAATTTGGTGTTTAAATGTGCAGCACCGGTTAGAAACGATCGGCCTGATATGAAATCAGTAGGGGAAGAGTTATGGGGAATAAGAGCTGACT ACCTCAAGAGTTCGAAGCGAGGGGATAGTGAAGCTATGGAAAGCTATAACAGGCCACAATATGATGGCAAGTACCTGAGGAAGCTCAACAAATTTGGGTA CTTGGGTAGCTTTAAGCTCTACGAAACAGTGACAAATATCGCCACTCCAACCTTTGACATGAAGAAGCTCCAGCCTGTTATCTTCTCTTCCTATCAGCCA ACTTTAGATGCTCAACTCTCAGACATATGCATAGCAACTGCTGTCCCTCCAACATTCTTCCCACCACATTACTTCAAGAACCAAGGCAGAGAATTCAACC TCATCGATGGTGCCATAGCTGCCAACAATCCCGGAAGCATTGATTCTCGAGGCGAACTCGACACGAGACTAGTAGTCTTATTGTGGATTTTGTTCATTTT GCTGGTAATGCGCAGACCTTGGTTGCCATAA
AA sequence Show only first row Show all	>Lus10028347 pacid=23165968 polypeptide=Lus10028347 locus=Lus10028347.g ID=Lus10028347.BGIv1.0 annot-version=v1.0 MCCGLLCPCIYKRRKATSRNVHSKDHVSMESASCLDQAPSVHEKVPASPLRVPPSPSRFSPSPKLSRLGSVHLNLSQVSRATRHFSESLKIGEGGFGCVY KAQLDDGQIVAIKRAKKEHFENLRAEFSSEVELLAKIDHRNLVKLLGYVDKGHERLIITEYVPNGTLREHLDEKQIIHRDVKSSNILLTESMRAKVADFG FARLGPVESDQTHISTKVKGTIGYLDPEYMKTYQLTPKSDVYSFGILLLEIMTGRRPVELKRPAPERVTLRWAFKKYNDSAVVEMVDPLMGEVVDAEILV KMVNLVFKCAAPVRNDRPDMKSVGEELWGIRADYLKSSKRGDSEAMESYNRPQYDGKYLRKLNKFGYLGSFKLYETVTNIATPTFDMKKLQPVIFSSYQP TLDAQLSDICIATAVPPTFFPPHYFKNQGREFNLIDGAIAANNPGSIDSRGELDTRLVVLLWILFILLVMRRPWLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028347 [exp]	0	1
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	2.2	0.8716
AT2G37195			unknown protein		Lus10023187 [exp]	4.0	0.8299
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10000225 [exp]	6.2	0.8381
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10021052 [exp]	7.3	0.8209
AT2G27490		ATCOAE	dephospho-CoA kinase family (....		Lus10013897 [exp]	9.6	0.8513
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10038818 [exp]	11.7	0.7869
AT5G15460		MUB2	membrane-anchored ubiquitin-fo...		Lus10013190 [exp]	12.2	0.7854
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	12.3	0.7990
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	15.2	0.8135
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	15.3	0.8264

Compare expression of checked genes

Lus10028347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.