Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36360 1345 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 1055 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 982 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 884 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT2G28470 868 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT3G52840 863 / 0 BGAL2 beta-galactosidase 2 (.1) AT5G56870 840 / 0 BGAL4 beta-galactosidase 4 (.1) AT2G32810 798 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 709 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 707 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041798 [exp] 1610 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10025980 [exp] 1397 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10000701 [exp] 1055 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 1048 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 1045 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10024292 [exp] 1018 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10000803 [exp] 946 / 0 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10006009 [exp] 870 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 864 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018100 [exp] 1447 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 1235 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 1065 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.006G144500 [exp] 1061 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 1054 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1044 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G099800 [exp] 868 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.009G012400 [exp] 860 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 826 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.017G057900 [exp] 813 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10028348 pacid=23166157 polypeptide=Lus10028348 locus=Lus10028348.g ID=Lus10028348.BGIv1.0 annot-version=v1.0 ATGGGGACTCACTCTTTTCCCAATGAGGTGTTCTTTAGGGTGCTGCTGCTGGGATTGTTAGGGTTATTGTGTTCTGAGTTGATTCAAGCTACTGTTACTT ACGATAGGAAGGCAATTGTGATTAATGGCCAAAGAAGAATCCTTTTCTCTGGCTCCATTCACTACCCCAGAAGCACTCCTGATATGTGGGAAGATCTGAT ACAGAAGGCTAAAGATGGAGGTGTGGATGGAATTGAGACCTATGTGTTCTGGAATGTGCATGAACCAACTCCTGGAAATTGGAATTTTGAAGGAAGGAAT GATTTGGTGAGGTTCATCAAGACAATCCAGAGAGCAGGCCTCTATGCTCATCTCCGCATTGGACCATACGTCTGTGCTGAATGGAATTTCGGAGGATTTC CGGTTTGGTTGAAGTATGTCCCTGGGATCAGCTTCAGAACAGACAATGAGCCGTTCAAGAGAGCAATGCAAGGGTTCACTGAGAAGATTGTTGGACTGAT GAAGAATGACAACTTGTTCGAGTCCCAAGGTGGCCCCATCATTCTTTCTCAGATTGAAAATGAGTATGGAGTACAGAGCAAGCTGTTTGGTGTACCTGGA TACAACTACATGAGCTGGGCTGCTGACATGGCTGTCAAAACTGGAACTGGAGTTCCATGGGTGATGTGCAAAGAAGAAGATGCTCCAGATCCAATTATAA ACACATGCAACGGGTTTTACTGTGATACATTTGCTCCCAACAAACCTTACAAGCCTACAATGTGGACTGAAGCTTGGAGTGGATGGTTCTCAGAATTTGG TGGTCCTCTTCACCAGCGTCCAGTTCAAGATTTGGCATTTAGTGTTGCCAAGTTTGTTCAGAAAGGAGGTTCATTTGTTAACTACTACATGTACCACGGA GGAACGAATTTCGGCCGTAGTGCTGGTGGCCCTTTCATCACTACCAGCTACGACTACGACGCTCCGTTAGATGAATATGGTTTGATTAGGCAGCCGAAGT ATGGCCATCTTAAGGAGCTGCATAGGTCGATCAAGATGTGCGAGCGTGCTCTCGTTTCGGCTGATCCTATTGTCACTCAGTTAGGACCGTTGCAACAGGC TCATGTGTACTCTACCGAAACCAGCGATTGTGCAGCTTTCCTAGCCAACTATGACACCAAATCTGCTATAAGAGTGCTGTTCAATAACATGCATTACAAC TTGCCTCCTTGGTCCATAAGCATCCTTCCGGATTGCAGAAACGTGGTATTCAACACGGCAAAGGTTGGAGTTCAGACATCTCAAATGGAAATGCTGCCAA CGAATTCGGAGATGCTTTCATGGGAAAGTTACGATGAAGATGTCTCCTCTGAACATGATGGCTTGACATTTACAACTTCGGGTCTCCTGGAGCAGATAAA TGTCACAAGGGATGCAAGTGACTACTTGTGGTACATAACAAACGTCGACATTGGTTCAGCCGAAAAATTCCTTCATGGAGGAGAATTGCCTACTCTAGTC GTTCGATCAAGCGGTCACGCTGTGCATATTTTTATCAATGGACAGCTCTCAGGGAGAACAGGAGGTCCGGTTGCTCTTCACGGGCTGGACAATGGAAAAT GGGACTTGTCCTGGCAAACCTGGACATACCAGGTTGGACTCAAAGGAGAAGCTATGAATCTCCTATCCCCAACTGGTGTCTCCGCTGTTGATTGGATGGA AACATCTTTGGTTGTACAGAAACAGCAACCTTTAACATGGCACAAGGCCTATTTCAATGCACCTGAAGGTGACGAGCCATTGGCTGTGGACATGCTAGGT ATGGGGAAGGGTCAGATATGGATAAATGGGCAGAGCATAGGAAGATACTGGACTGCGTTTGCAAATGGCCAATGCAATGGCTGCAGCTATGCTGGATCAT TCCGTCCTCCAAAGTGTCAACTTGGTTGCGGCCAGCCAACTCAACGATGGTACCATGTGCCGCGATCATGGTTGAAACCGACCCAGAATCTCTTGGTGGT GTTCGAGGAACTCGGAGGCGATCCTTCGAGGATTTCCCTCGTCAAGAGATCGATGACCACCGTTTGTGCTGAGGTAGCTGAGTTCCACCCTACTCTCAAG AATTGGCAAATCGAAAGCTATGGTAAAGCAGAAGTGTTCCACAGCCCCAAGGTTCATCTGAGGTGTAGCCAAGGCCAGGCGATTTCGTCCATCAAATTTG CGAGCTTTGGCACACCACTGGGAACCTGTGGCTCATATCAGCAAGGAACCTGCCATGCTGCAACCTCCTACGACATCATAGAGAAGAAGTGCATAGGAAA ACAGAGATGTGCAGTAACAATATCCAACAGCAACTTCGGTCAGGACCCATGCCCAAATGTGCTGAAAAGGTTGTCTGTTGAAGCAGTTTGTGTCCCAACG AGGGCTTGA
AA sequence Show only first row Show all	>Lus10028348 pacid=23166157 polypeptide=Lus10028348 locus=Lus10028348.g ID=Lus10028348.BGIv1.0 annot-version=v1.0 MGTHSFPNEVFFRVLLLGLLGLLCSELIQATVTYDRKAIVINGQRRILFSGSIHYPRSTPDMWEDLIQKAKDGGVDGIETYVFWNVHEPTPGNWNFEGRN DLVRFIKTIQRAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKRAMQGFTEKIVGLMKNDNLFESQGGPIILSQIENEYGVQSKLFGVPG YNYMSWAADMAVKTGTGVPWVMCKEEDAPDPIINTCNGFYCDTFAPNKPYKPTMWTEAWSGWFSEFGGPLHQRPVQDLAFSVAKFVQKGGSFVNYYMYHG GTNFGRSAGGPFITTSYDYDAPLDEYGLIRQPKYGHLKELHRSIKMCERALVSADPIVTQLGPLQQAHVYSTETSDCAAFLANYDTKSAIRVLFNNMHYN LPPWSISILPDCRNVVFNTAKVGVQTSQMEMLPTNSEMLSWESYDEDVSSEHDGLTFTTSGLLEQINVTRDASDYLWYITNVDIGSAEKFLHGGELPTLV VRSSGHAVHIFINGQLSGRTGGPVALHGLDNGKWDLSWQTWTYQVGLKGEAMNLLSPTGVSAVDWMETSLVVQKQQPLTWHKAYFNAPEGDEPLAVDMLG MGKGQIWINGQSIGRYWTAFANGQCNGCSYAGSFRPPKCQLGCGQPTQRWYHVPRSWLKPTQNLLVVFEELGGDPSRISLVKRSMTTVCAEVAEFHPTLK NWQIESYGKAEVFHSPKVHLRCSQGQAISSIKFASFGTPLGTCGSYQQGTCHAATSYDIIEKKCIGKQRCAVTISNSNFGQDPCPNVLKRLSVEAVCVPT RA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	1.0	0.9454
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	2.0	0.8985
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10036747 [exp]	3.2	0.8785
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	3.5	0.8787
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Lus10018594 [exp]	4.7	0.8586
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	6.9	0.8568
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	7.5	0.8700
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	8.9	0.8442
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	10.2	0.8543
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	10.4	0.8464

Compare expression of checked genes

Lus10028348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.