Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51040 294 / 1e-101 RTH RTE1-homolog (.1.2.3) AT2G26070 221 / 9e-73 RTE1 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041800 [exp] 481 / 2e-175 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10030001 [exp] 188 / 2e-59 AT2G26070 276 / 5e-94 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Lus10035322 [exp] 0 / 1 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017900 [exp] 311 / 3e-108 AT3G51040 280 / 5e-96 RTE1-homolog (.1.2.3) Potri.018G053900 [exp] 219 / 6e-72 AT2G26070 330 / 4e-115 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Potri.006G229900 [exp] 217 / 5e-71 AT2G26070 360 / 3e-127 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05608 [flax] [poplar] DUF778 Protein of unknown function (DUF778)
Representative CDS sequence Show only first row Show all	>Lus10028350 pacid=23166110 polypeptide=Lus10028350 locus=Lus10028350.g ID=Lus10028350.BGIv1.0 annot-version=v1.0 ATGGGGGAACTAGTGGATCCTGAGCAACAAAGGATATTGGACGAGAACTTTTCAGGGAGTTTGCAGATTGATCCCAATAGAGCTCGATTCCCTTACTGTA TCGTCTGGACTCCTCTTCCTGTTATATCATGGCTCATTCCTTTTATCGGCCACATTGGTATCTGCAGAGAGGATGGTGTGATCCTGGACTTTGCAGGGCC TAACTTTGTTTGTGTCGATAATTTTGCATTCGGTTCAGTAACACGCTACTTCCAGATCAACAAGGAACAGGACTGTGACATGTTCTCCCACGAGTCGGCG TTCATCGGTCAGGACGAAGAGGACCAATACAGCATTCAAAAATCCGGAAAAGATGGATCGGTCTGGGACAGTGCATTAACCAAGGGGACACAGGAGTTCC AGCACCATGCATACAGTCTTTTGACGTGCAATTGCCATTCATTTGTTGCCAACAACTTGAACAGGTTGGGATTCCAGTCAGGCGGGTGGAATGTGGTGAA CCTTGCACTTCTGTTGTTGATGAAAGGCCGTTGGGTGAATACAGGAGCAATGTTGAGATCGTACTTGCCCTTTGTGATAGTGAGTGTGTTCGGGATTATA TTGGGTGGGATGACTTTCTTAACATTTTGGGTGTTCTTCATGGTACTTCTGGTTGGTTGGTTTATCATGGCTACTTACTGTTTCAAGGATCTCATCCAGT TATAG
AA sequence Show only first row Show all	>Lus10028350 pacid=23166110 polypeptide=Lus10028350 locus=Lus10028350.g ID=Lus10028350.BGIv1.0 annot-version=v1.0 MGELVDPEQQRILDENFSGSLQIDPNRARFPYCIVWTPLPVISWLIPFIGHIGICREDGVILDFAGPNFVCVDNFAFGSVTRYFQINKEQDCDMFSHESA FIGQDEEDQYSIQKSGKDGSVWDSALTKGTQEFQHHAYSLLTCNCHSFVANNLNRLGFQSGGWNVVNLALLLLMKGRWVNTGAMLRSYLPFVIVSVFGII LGGMTFLTFWVFFMVLLVGWFIMATYCFKDLIQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10028350 [exp]	0	1
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10041800 [exp]	1.0	0.9570
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	5.7	0.8295
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000694 [exp]	6.2	0.8425
AT4G16695			unknown protein		Lus10007491 [exp]	7.7	0.8047
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	8.4	0.8275
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	10.8	0.8346
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	12.0	0.8258
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	15.0	0.8154
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10030755 [exp]	15.9	0.7538
AT1G27480			alpha/beta-Hydrolases superfam...		Lus10018664 [exp]	15.9	0.8065

Compare expression of checked genes

Lus10028350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.