Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53210 310 / 2e-105 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 308 / 2e-104 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 251 / 3e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G45370 166 / 3e-49 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT4G08290 162 / 9e-49 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G21890 160 / 7e-47 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 160 / 2e-46 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 155 / 6e-45 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G30420 154 / 1e-44 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 154 / 2e-44 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041801 [exp] 393 / 1e-138 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10024301 [exp] 296 / 7e-99 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2) Lus10038959 [exp] 259 / 3e-85 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 258 / 3e-84 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10010647 [exp] 243 / 6e-79 AT1G75500 492 / 6e-175 Walls Are Thin 1 (.1.2) Lus10035693 [exp] 169 / 5e-50 AT5G45370 502 / 1e-178 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10037284 [exp] 162 / 5e-48 AT5G45370 475 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10041634 [exp] 163 / 2e-47 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033316 [exp] 162 / 3e-47 AT4G19185 520 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017800 [exp] 360 / 9e-125 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.005G233600 [exp] 305 / 4e-103 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 301 / 9e-102 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 272 / 2e-90 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G085100 [exp] 181 / 8e-55 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 170 / 1e-50 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 166 / 7e-49 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176100 [exp] 164 / 2e-48 AT4G08290 427 / 2e-149 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.016G031400 [exp] 163 / 1e-47 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G006600 [exp] 154 / 1e-44 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10028351 pacid=23165969 polypeptide=Lus10028351 locus=Lus10028351.g ID=Lus10028351.BGIv1.0 annot-version=v1.0 ATGTGGGCTTTAGCAGAGAAGATGAAGCTGCACATAGCTATGACAGTGTTCCAATTAGGGTATGCAGGAAACCATGTAATCCTCAGAGCTGCACTCAACT TGGGAATAAGCAAGCTGGTCTTCCCACTCTACAGGAATCTCGTCGCTCTGCTTTTCCTTGCTCCCTTTACTTATTTCCTGGAGAAGAAAGACAGGCCACC ACTTACTTTTGGCATCTTGATGCAGTTGTTCCTCCTTGGATTTGTTGGAATAGGTTCCAATCAACTGTTTTATCTACTGGGTCTAGACAACACTTCACCC ACATTAGCTTCTGCCACAGAGAATGCTGTCCCTGCTGTAACCTTCATCTTAGCTACATTACTCAGGCAAATTCACTTCAACAGAAGAGATGGGATGGCTA AGGTCGTTGGAACGCTGACTTCCTTTATTGGAACATCAGTCATAACCTTGTACAAAGGGCCAACAGTTTACAACCCAATTACCAACAATTTGGTGGTCTC CTCTAACTCTAGTGCCCAAAAAAGCTGGAGTCTTGGCTGCATGTTCAACCTTGGACATTGCTTGTGTTGGTCCAGTTGGATAGTGCTGCAAGCAATGATC TTGAAGAACTACCCTGCTCCATTCTCAGTATACTCATTCACTTGCTTCTTTGGGATACTCCAATTCCTTGCTGTTGCCTTTGTTTTTGAGAGAGATCTCC AGGCCTGGCAAGTCCACTCAACCGGTGAAATACTCAGTATTCTGTACTCGGATGATTGGAGCAATCCTGATAATAGCCGGACTGTACATGGTTCTCTGGG GGAAAAGTGA
AA sequence Show only first row Show all	>Lus10028351 pacid=23165969 polypeptide=Lus10028351 locus=Lus10028351.g ID=Lus10028351.BGIv1.0 annot-version=v1.0 MWALAEKMKLHIAMTVFQLGYAGNHVILRAALNLGISKLVFPLYRNLVALLFLAPFTYFLEKKDRPPLTFGILMQLFLLGFVGIGSNQLFYLLGLDNTSP TLASATENAVPAVTFILATLLRQIHFNRRDGMAKVVGTLTSFIGTSVITLYKGPTVYNPITNNLVVSSNSSAQKSWSLGCMFNLGHCLCWSSWIVLQAMI LKNYPAPFSVYSFTCFFGILQFLAVAFVFERDLQAWQVHSTGEILSILYSDDWSNPDNSRTVHGSLGEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53210			nodulin MtN21 /EamA-like trans...		Lus10028351 [exp]	0	1
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	4.5	0.9361
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	5.0	0.9387
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	5.7	0.9174
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10021817 [exp]	14.5	0.8632
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	16.1	0.9225
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	16.7	0.8988
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	18.2	0.9229
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10006291 [exp]	20.6	0.8944
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036817 [exp]	20.9	0.9222
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Lus10035945 [exp]	22.2	0.9165

Compare expression of checked genes

Lus10028351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.