Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51060 205 / 3e-63 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) AT5G66350 194 / 1e-59 SHI SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) AT1G75520 173 / 3e-51 SRS5 SHI-related sequence 5 (.1) AT4G36260 167 / 4e-49 SRS2, STY2 STYLISH 2, SHI RELATED SEQUENCE 2, Lateral root primordium (LRP) protein-related (.1) AT1G19790 166 / 2e-48 SRS7 SHI-related sequence 7 (.1.2) AT2G18120 147 / 1e-42 SRS4 SHI-related sequence 4 (.1) AT2G21400 132 / 2e-37 SRS3 SHI-related sequence3 (.1) AT5G12330 127 / 4e-34 LRP1 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) AT3G54430 92 / 3e-22 SRS6 SHI-related sequence 6 (.1) AT5G33210 88 / 2e-21 SRS8 SHI-related sequence 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041803 [exp] 196 / 5e-63 AT3G51060 88 / 1e-21 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Lus10024305 [exp] 178 / 7e-53 AT1G75520 260 / 8e-85 SHI-related sequence 5 (.1) Lus10003416 [exp] 171 / 2e-50 AT1G75520 258 / 6e-84 SHI-related sequence 5 (.1) Lus10041802 [exp] 134 / 3e-37 AT5G66350 150 / 4e-44 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10036032 [exp] 131 / 3e-36 AT5G12330 214 / 2e-68 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Lus10009697 [exp] 91 / 5e-22 AT5G66350 103 / 5e-27 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Lus10017492 [exp] 87 / 4e-20 AT2G21400 120 / 1e-34 SHI-related sequence3 (.1) Lus10028794 [exp] 81 / 7e-18 AT5G66350 123 / 5e-34 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017500 [exp] 212 / 2e-66 AT3G51060 238 / 6e-76 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.005G118200 [exp] 211 / 7e-66 AT3G51060 233 / 6e-74 STYLISH 1, SHI RELATED SEQUENCE 1, Lateral root primordium (LRP) protein-related (.1) Potri.002G028500 [exp] 177 / 4e-53 AT1G75520 261 / 1e-85 SHI-related sequence 5 (.1) Potri.005G234200 [exp] 162 / 2e-47 AT1G75520 222 / 2e-70 SHI-related sequence 5 (.1) Potri.004G160600 [exp] 156 / 3e-46 AT5G66350 170 / 4e-52 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.009G121600 [exp] 150 / 5e-44 AT5G66350 181 / 3e-56 SHORT INTERNODES, Lateral root primordium (LRP) protein-related (.1) Potri.009G070800 [exp] 131 / 2e-35 AT5G12330 231 / 9e-74 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G276200 [exp] 131 / 4e-35 AT5G12330 226 / 2e-71 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.003G196100 [exp] 128 / 9e-35 AT5G12330 159 / 8e-47 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4) Potri.001G027700 [exp] 121 / 3e-32 AT5G12330 157 / 4e-46 LATERAL ROOT PRIMORDIUM 1, Lateral root primordium (LRP) protein-related (.1), Lateral root primordium (LRP) protein-related (.2), Lateral root primordium (LRP) protein-related (.3), Lateral root primordium (LRP) protein-related (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10028352 pacid=23166175 polypeptide=Lus10028352 locus=Lus10028352.g ID=Lus10028352.BGIv1.0 annot-version=v1.0 ATGGCTGGTCTCTTCTCTTTAGGCGGTGGTGGTGGAGGAGGAGGAGGGAGGGGTAGTAGTGGAAACACAAATAATAATAATACAGAGATCACGCCGGAGA GCAATAACAACAGACAGCAGCAGCAGCAGGCGGAATTGATGCAGCGGCACCAAGATCTCTACTCTTCCGCTGCAGGGTTAGGAGTGGGACCCACTCATCA TCACTTGTACCTATCTGCTGATCATCACCACCACCACCCTTCTTCCTCCAGATCCGCCGCCGCGTTAATGATGATGCGTCCCGGCGGAGGAGAAGGAGGA AGGGGCTCCAGCAGTAGTATTAGCAACGTTGGTGGTGGAATTAGTTGCCAAGACTGTGGGAACCAAGCGAAAAAGGACTGCAGCCATAGTAGATGCAGGA CTTGCTGCAAGAGCCGCGGCTACAATTGCCAAACCCATGTCAAAAGCACTTGGGTTCCTGCCGCCAAACGCCGTGAGCGCCAGCAGCAGCAGCACCCCGT TACCTCCGTCCAACAGCCACATCAGCAGCAGCATCAAGTTGTTCCCAAGCGGCCTAGAGATACAACATCTTCAACTCTCGTCTCCCATCCTCCTGGGTTA GAGGTGGCGGTAGGTAATTTCCCGGCAGAAGTGAGCTCGGAGGCGCTGCTCCGGTGCGTGAGGATGAGCGGAGTGGACGAGAGCGATGCACAGCAGTACG CGTACCAGACGGCGGTGAGCATTGGAGGGCACACGTTCAAAGGGATACTGTACGATCAAGGTCCAGCAGGAGAGAGCTCTAGTTACATGGCGGCAACTAC CGACACTTCATCAGCCAGTGGTGTCCAACCGCTCAATCTCATTACCACTGCCGCCTCGGCCTCAGCGTCTGCGTCCTCCAACATCGGCGGCGGTGGAGTG ACGTCTAATGCCGCCGGAGCTAGCTACTTGGATCCGTCTTCGCTGTACACAGCCGTACCGCTAAGTAACTACATGGCTGGTACGCAATTCTTCCCGAATA ACCCGAGATGA
AA sequence Show only first row Show all	>Lus10028352 pacid=23166175 polypeptide=Lus10028352 locus=Lus10028352.g ID=Lus10028352.BGIv1.0 annot-version=v1.0 MAGLFSLGGGGGGGGGRGSSGNTNNNNTEITPESNNNRQQQQQAELMQRHQDLYSSAAGLGVGPTHHHLYLSADHHHHHPSSSRSAAALMMMRPGGGEGG RGSSSSISNVGGGISCQDCGNQAKKDCSHSRCRTCCKSRGYNCQTHVKSTWVPAAKRRERQQQQHPVTSVQQPHQQQHQVVPKRPRDTTSSTLVSHPPGL EVAVGNFPAEVSSEALLRCVRMSGVDESDAQQYAYQTAVSIGGHTFKGILYDQGPAGESSSYMAATTDTSSASGVQPLNLITTAASASASASSNIGGGGV TSNAAGASYLDPSSLYTAVPLSNYMAGTQFFPNNPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	0	1
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10041802 [exp]	2.8	0.8211
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10024305 [exp]	5.7	0.8091
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	6.0	0.8082
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10004398 [exp]	11.2	0.7218
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Lus10005836 [exp]	11.7	0.7219
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10024594 [exp]	11.8	0.7764
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	13.2	0.7767
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	16.5	0.7390
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10003416 [exp]	18.1	0.8170
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	25.1	0.7690

Compare expression of checked genes

Lus10028352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.