Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51070 890 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64030 826 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 790 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 786 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G40280 556 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 550 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 523 / 2e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 491 / 7e-163 Putative methyltransferase family protein (.1) AT2G39750 474 / 9e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 455 / 4e-149 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041804 [exp] 1493 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 1084 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025976 [exp] 969 / 0 AT3G51070 964 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 817 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 816 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 804 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 798 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 795 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 762 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118100 [exp] 968 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 966 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 845 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 841 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 830 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G184500 [exp] 823 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 578 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 524 / 9e-175 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 469 / 2e-154 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 469 / 3e-154 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028354 pacid=23165999 polypeptide=Lus10028354 locus=Lus10028354.g ID=Lus10028354.BGIv1.0 annot-version=v1.0 ATGGCAATCGGACGGCCGTCTCGCTCCGGTAAGCGAACCTCATCTTCCTCTTCTTCCTACACTTCCACGATCACCACCATTGCCTTCATCGCATTATGCG TCCTCGGCGTCTGGATGCTTACTTCCACCTCCGTCAACAACCCCCCTGCCTCCACCACCAACAAGGCCGCCGTCGATTCCATATCCACCGCCGATGATGT CGCCGTCGTCGATCACGCCGCAGCCCAGGCTCGTCCCGTTGAGAATAATAACGCCAAGAAGCAGTCCGTTTTCGAAGACAACCCGGGCGATCTCCCTGCC GATGCGATTAAATCCGACGACAGTAATAATAATAGTCAGGTAGATGAGAAGGCGGCGGCGGAGGAGAAGGATAAGCACACTCAGATATCGGAGGAGAGCA CTATGACGACTGCTCAGAGCGTGAATCAGCAGGTCATTTCTGAGGAAACGACGCCTGTTGAAACTGAAGAAGTGGAAGAAGAGAAGCCCAGTTCGGATCC AGAACAGAAACCACAACCTGAGGAGGAAAAGGCTGAAATTAATCCTGACGACACTACTCAGAAAATCCTGACGAATCAGGGAAATGCAGAAGACAAGCCG ATGGAGACAGAAGTACAGCAGAAAACCGAAGAAGTTAAATCTTTAGACGAGCTGCAACGGGAGCATCTGAGAAAGGAGGAGGATAAAGGAATTCAGGATG CGGTTGAGGAGAAGCCGGAGAATAAGGTGACAGAGGAGGATCAAGCGCAGAGGATGCATCAGCAGCAGCAACAGATGCAGGATGCTCAGAAGGTCGAAAC GACGACGAATGATCAGCCTGAGGTGAAACCGGAGAAGGGCACGGAAATTAATGAGAAAGCGGAAGAGAAACAGATTTTCAGGGATGTGACGACTCCAGGG GTGCAAGTTCATCAGCTTGAGAATCAGGATCCTCAGCATCCTGTTCAGCAGAAGCCAAATGATGTGTCGAGTGGTGAAACCGCGACCGGAACTTCATCGG AGATCCCTGAGGAGTCGAAGGAATCGAAGAAGTCATGGGCGACTCAAGCCAGTGAGTCGGAGAACGAGAAAGAGAGGCGTAAGGACGATGAACCAAAAGG AGGACAGGATGTCGGTGTTTCTTGGCAGCTCTGTAATGTTACGGCGGGGAGTGATTACATTCCTTGTTTGGATAACGACAAGGCGATCAAGAAACTGAGG TATACGGGGCATTTCGAGCACCGGGAGAGACATTGCCCCGAGGAACCTCCGACTTGTTTGGTCCCTGTTCCTCAAGGATACAAAACCCCCATCCCTTGGC CAAGTAGCAGAGACAAGATATGGTACAACAATGTTCCTCGCACAAAATTGGCAGAATATAAGGGACATCAGAACTGGGTTAAGGTGACTGGGGAGTTCCT GACATTCCCAGGAGGTGGGACTCAGTTCATCCATGGAGCTCTGCATTACATTGATTTCCTCCAGAAGGCAGTTCCAAAGATCGGATGGGGAAAACACACC AGAGTGATTTTGGATGTTGGATGTGGAGTTGCAAGCTTTGGAGGGTACATCTTTGAGAGGGATGTTCTTACGATGTCGTTTGCACCCAAGGATGAACACG AAGCTCAAGTTCAGTTTGCGTTAGAGAGAGGGATTCCTGCAATATCAGCTGTGATGGGATCCAAACGGCTGCCATTCCCGAGTAATGCGTTTGATGCTAT TCATTGTGCTCGATGCAGGGTACCCTGGCATAACGAAGGAGGTCTGTTGCTTCTGGAATTGAATCGTCTCCTGCGTCCCGGAGGCTACTTTGTCTGGTCA GCAACTCCTGTGTATCAAAAGTTAAAAGAAGATGTCGAAATATGGCAAGCAATGTCTGCGTTAACGGTGTCAATGTGTTGGGATCTTGTGACAATCAAGA GAGACAAACTTAATAAGATTGGAGCTGCTATTTACCGGAAGCCAACCAACAATGATTGCTATGATCAGAGAAAGAAGAATGCACCTCCAATGTGTCCAAA TGATGATGATCCAAGTGCTGCATGGTCTGTGCCGTTGCAAGCATGCATGCACAGAGTGCCATCCGAGCCAAGTATCCGAGGCACTCAATGGCCGGATGAA TGGCCTGCCAGATTACAGAAACCTCCTTACTGGTTGAATAGCTCTCAGATGGGGATCTATGGCAAACCAGCTCCTCAAGACTTCACAACTGACTATAAAC ACTGGAAAAGTGTGGTGACTAATACTTACATGAAAGGATTGGGAATAAATTGGGATGGGGTGAGAAATGTTATGGACATGAGGGCTGTTTATGGAGGTTT CGCAGCAGCACTGAGGGATATGAAGGTCTGGGTTTTGAACGTGGTGAACGTAGATTCTCCAGACACACTTCCAATAATATACGAAAGAGGGCTGTTCGGA ATATACCATGATTGGTGCGAATCCTTCAGCACATATCCTCGGACTTATGATCTGCTCCATGCTGATCATCTCTTCTCGAAGCTAAAATCCAGGTGCAAGC TCGTACCTGTATTGATAGAGGTTGACAGAGTGCTAAGACCAGGAGGTAAGTTCATTGTCCGAGACGAATCAAATACAATAGGGGAAGTGGAAAATATACT CAAGTCTCTGCACTGGGAGGTTCACGTGACCTTCTCCAAGGACCAAGAAGGTGTCCTTAGTGGACAAAAAGGTGACTGGCGGCCAGAGACAATTGCAGCT TCCTCGTGA
AA sequence Show only first row Show all	>Lus10028354 pacid=23165999 polypeptide=Lus10028354 locus=Lus10028354.g ID=Lus10028354.BGIv1.0 annot-version=v1.0 MAIGRPSRSGKRTSSSSSSYTSTITTIAFIALCVLGVWMLTSTSVNNPPASTTNKAAVDSISTADDVAVVDHAAAQARPVENNNAKKQSVFEDNPGDLPA DAIKSDDSNNNSQVDEKAAAEEKDKHTQISEESTMTTAQSVNQQVISEETTPVETEEVEEEKPSSDPEQKPQPEEEKAEINPDDTTQKILTNQGNAEDKP METEVQQKTEEVKSLDELQREHLRKEEDKGIQDAVEEKPENKVTEEDQAQRMHQQQQQMQDAQKVETTTNDQPEVKPEKGTEINEKAEEKQIFRDVTTPG VQVHQLENQDPQHPVQQKPNDVSSGETATGTSSEIPEESKESKKSWATQASESENEKERRKDDEPKGGQDVGVSWQLCNVTAGSDYIPCLDNDKAIKKLR YTGHFEHRERHCPEEPPTCLVPVPQGYKTPIPWPSSRDKIWYNNVPRTKLAEYKGHQNWVKVTGEFLTFPGGGTQFIHGALHYIDFLQKAVPKIGWGKHT RVILDVGCGVASFGGYIFERDVLTMSFAPKDEHEAQVQFALERGIPAISAVMGSKRLPFPSNAFDAIHCARCRVPWHNEGGLLLLELNRLLRPGGYFVWS ATPVYQKLKEDVEIWQAMSALTVSMCWDLVTIKRDKLNKIGAAIYRKPTNNDCYDQRKKNAPPMCPNDDDPSAAWSVPLQACMHRVPSEPSIRGTQWPDE WPARLQKPPYWLNSSQMGIYGKPAPQDFTTDYKHWKSVVTNTYMKGLGINWDGVRNVMDMRAVYGGFAAALRDMKVWVLNVVNVDSPDTLPIIYERGLFG IYHDWCESFSTYPRTYDLLHADHLFSKLKSRCKLVPVLIEVDRVLRPGGKFIVRDESNTIGEVENILKSLHWEVHVTFSKDQEGVLSGQKGDWRPETIAA SS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	0	1
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027353 [exp]	1.0	0.9292
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	2.4	0.9244
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	3.5	0.9143
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	3.9	0.9111
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10002182 [exp]	3.9	0.8703
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	4.9	0.9118
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	5.9	0.9065
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	7.5	0.9025
AT4G02210			unknown protein		Lus10042596 [exp]	7.9	0.8624
					Lus10017572 [exp]	9.0	0.8574

Compare expression of checked genes

Lus10028354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.