Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17280 43 / 9e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041805 [exp] 152 / 1e-48 AT5G17280 71 / 6e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017200 [exp] 45 / 2e-06 AT5G17280 44 / 5e-06 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09791 [flax] [poplar] Oxidored-like Oxidoreductase-like protein, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10028356 pacid=23165979 polypeptide=Lus10028356 locus=Lus10028356.g ID=Lus10028356.BGIv1.0 annot-version=v1.0 ATGTTATCGTGCACATCACCGCATCGAACCATTCCTCACAAACCACATCGAACCATTGACCTACAAAATGCCCCAGCCGTCTCCTCCGCCATGAGAAATC TCAGCCTCAGACCAATCCTATCACCGTTCTTCTCCATTCACCACCACCACCGCAGGGTCGCCGCCCCCAAGCTTTCAACCTTTAGCGCCGATCCTCTCCC TAGAATGGAAGCTAAGGTCGAACCAGATCGCGGAGGTTCAACAGAGACTTTCGACAAAAACAAGATAGAGGAGAAGGAAAAGGAGAAGACGGAGAAGGCG ATTCCGCCGCCGCCGCCGCCGGAGAAACCGGAGCCAGGAGATTGCTGCGGGAGCGGGAGCGGGTGCGTGAGATGCGTTTGGGACGTATATTACGAGGAGC TGGAGGATTACAACAAGATATATGAAACTGTTGCAGACGCATCTGGATCGTAA
AA sequence Show only first row Show all	>Lus10028356 pacid=23165979 polypeptide=Lus10028356 locus=Lus10028356.g ID=Lus10028356.BGIv1.0 annot-version=v1.0 MLSCTSPHRTIPHKPHRTIDLQNAPAVSSAMRNLSLRPILSPFFSIHHHHRRVAAPKLSTFSADPLPRMEAKVEPDRGGSTETFDKNKIEEKEKEKTEKA IPPPPPPEKPEPGDCCGSGSGCVRCVWDVYYEELEDYNKIYETVADASGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17280			unknown protein		Lus10028356 [exp]	0	1
AT5G02090			unknown protein		Lus10024357 [exp]	3.7	0.8558
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	7.2	0.8481
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	7.2	0.8333
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	7.7	0.8435
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	8.4	0.8222
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	9.5	0.8209
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Lus10021551 [exp]	10.1	0.8045
AT5G12170		CLT3	CRT (chloroquine-resistance tr...		Lus10000891 [exp]	11.3	0.7296
AT1G08315			ARM repeat superfamily protein...		Lus10024145 [exp]	13.0	0.8113
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	13.0	0.8197

Compare expression of checked genes

Lus10028356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.