Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36250 593 / 0 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT1G44170 438 / 2e-150 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 409 / 4e-138 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT3G66658 160 / 4e-43 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT3G48170 124 / 1e-30 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 124 / 1e-30 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 119 / 1e-28 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48000 114 / 6e-27 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 104 / 8e-24 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G23800 103 / 2e-23 ALDH2B7 aldehyde dehydrogenase 2B7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041806 [exp] 907 / 0 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031280 [exp] 519 / 0 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 512 / 2e-179 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10002557 [exp] 518 / 1e-173 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10029684 [exp] 440 / 4e-151 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 433 / 2e-148 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 429 / 6e-147 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 423 / 5e-144 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10037694 [exp] 410 / 2e-131 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017100 [exp] 660 / 0 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.001G259100 [exp] 536 / 0 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.001G412900 [exp] 443 / 2e-151 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G179300 [exp] 432 / 6e-148 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.002G081800 [exp] 432 / 6e-148 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G069800 [exp] 432 / 4e-147 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.008G106000 [exp] 152 / 6e-40 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.015G070600 [exp] 122 / 5e-30 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 122 / 6e-30 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 115 / 2e-27 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10028357 pacid=23166127 polypeptide=Lus10028357 locus=Lus10028357.g ID=Lus10028357.BGIv1.0 annot-version=v1.0 ATGGAGGGAAGAATCGACAAGGATTTGTGGGAGCTGCGACAGACTTTCAAGAGCAGGAAAACGAGGAGCCTTGAGTGGAGGAAGACTCAGCTCAAGGGTT TGCTCGATCTGGTTCGTGAAAATGAACAAACTTTCTATGATGTTCTTCTTCAGGACCTGGGTAAACACCCTGTTGAATCCTTCAGAGACGAGATCGGTGT GGTGAAGAAATCGGCCGACCACTCCCTTGCCAATATCAAGAATTGGATGGCACCCAGAAAGGGGTCAATACCGTTAGTTTTCTTCCCGGCGAGTGGGAAG ATTATGTCCGAACCATTTGGAGTTGTTTTGATCATGGGATCTTGGAACTTCCCTATTTCGCTGCTTCTGGACCCATTGATTGGAGCAATCTCAGCTGGCA ACACGGTACTTCTGAAGCCATCAGAGCTGGCTCCACAATGCTCTTCTTTCCTGGCCAAAGCCATCCCAAAGTACTTGGATCCTACAGCCATTAAGGTCAT TGAAGGTGGCAAGGAAACTTCTCAGCTCCTCCTCCAGCAGAAATGGGACAAAATTTTCTTCACTGGGAGCAAAGCTGTTGGCCGGATAGTGATGACCGCT GCAGCTCAGCATCTGACACCTGTCACTCTGGAGTTGGGTGGGAAGTGCCCTGCCATTGTCGACCTTTCCACTATCTCCAGCAGTTATGATATTCGGGTTC TGGCAAAGAGAATCGTTGGAGGGAAATGGGCACCCTGCAGTGGACAGGCCTGCATAAGTGTTGATTATCTGCTTGTGGAAGAAAAGCATGTCCAACACCT GATAGATTTGTTGAAGAAGTATATAAAAAGATTCTACGGTGAGCATCCAAGGGAATCAGACAGCATTTGCAGAATAGCGAACACAAGGAATTTCGAGAGG CTAAAAGGTCTGCTCGCAGATCCTGCTACCTCCGCTTCAATTGTTGCTGGTGGATCCATATATGAGGAAAGACAGTTTATTGACCCAACAATCCTGCTGA ATCCTCCCCTTGATTCTGAGTTAATGACTGAAGAGATTTTCGGTCCTTTGCTTCCAATAATCACTCTGAACGACATTGAGGAAAGCATAGAATTCATCAA CTCCAAAGCGAAGCCACTCGCAATCTACGCTTTCACCAAGGATGAAAAGCTCAAGAACATGATTCTATCTGAGACATCCTCTGGTGGTGTGACATTCAAC GACACAATGGTTCAGTTTCTGTGCGATTCTCTGCCATTTGGAGGAGTTGGAGGGAGTGGGTTTGGAAGGTACCACGGGAAGTACTCTTTTGAGACATTCA GCCATGAGAAAGCAGTAATGGAAAGAGCGTATTATCCAGAGCTTGAGCCCAGGTACCCGCCATGGAATAGGTTCAAGCTCAAGTTCATCCAGTTGGCTTA CAACTTCGATTACTTTGGACTCGCCTTGCTGCTTCTGGGATTGAAGAGGACGGAATAG
AA sequence Show only first row Show all	>Lus10028357 pacid=23166127 polypeptide=Lus10028357 locus=Lus10028357.g ID=Lus10028357.BGIv1.0 annot-version=v1.0 MEGRIDKDLWELRQTFKSRKTRSLEWRKTQLKGLLDLVRENEQTFYDVLLQDLGKHPVESFRDEIGVVKKSADHSLANIKNWMAPRKGSIPLVFFPASGK IMSEPFGVVLIMGSWNFPISLLLDPLIGAISAGNTVLLKPSELAPQCSSFLAKAIPKYLDPTAIKVIEGGKETSQLLLQQKWDKIFFTGSKAVGRIVMTA AAQHLTPVTLELGGKCPAIVDLSTISSSYDIRVLAKRIVGGKWAPCSGQACISVDYLLVEEKHVQHLIDLLKKYIKRFYGEHPRESDSICRIANTRNFER LKGLLADPATSASIVAGGSIYEERQFIDPTILLNPPLDSELMTEEIFGPLLPIITLNDIEESIEFINSKAKPLAIYAFTKDEKLKNMILSETSSGGVTFN DTMVQFLCDSLPFGGVGGSGFGRYHGKYSFETFSHEKAVMERAYYPELEPRYPPWNRFKLKFIQLAYNFDYFGLALLLLGLKRTE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10028357 [exp]	0	1
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	3.0	0.9046
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	4.0	0.9038
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	5.7	0.8868
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	7.2	0.8785
AT1G25450		KCS5, CER60	ECERIFERUM 60, 3-ketoacyl-CoA ...		Lus10041452 [exp]	8.7	0.8721
AT5G37550			unknown protein		Lus10020807 [exp]	11.0	0.8612
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10006356 [exp]	11.5	0.8359
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	12.1	0.8680
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	12.4	0.8655
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	13.9	0.8678

Compare expression of checked genes

Lus10028357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.