Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66330 405 / 4e-140 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 171 / 3e-49 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 125 / 4e-32 Leucine-rich repeat (LRR) family protein (.1) AT4G28650 114 / 3e-27 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G11080 108 / 3e-25 AtRLP35 receptor like protein 35 (.1) AT3G17640 105 / 6e-25 Leucine-rich repeat (LRR) family protein (.1) AT3G05660 107 / 7e-25 AtRLP33 receptor like protein 33 (.1) AT3G11010 105 / 1e-24 AtRLP34 receptor like protein 34 (.1) AT1G80080 105 / 2e-24 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT1G71400 104 / 5e-24 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007417 [exp] 176 / 4e-51 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 176 / 4e-51 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 161 / 2e-45 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10002822 [exp] 135 / 5e-36 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10041809 [exp] 109 / 3e-29 AT5G66330 131 / 6e-38 Leucine-rich repeat (LRR) family protein (.1) Lus10005017 [exp] 115 / 1e-27 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10007233 [exp] 108 / 3e-25 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000814 [exp] 108 / 3e-25 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 106 / 1e-24 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016800 [exp] 461 / 9e-162 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 444 / 5e-155 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 370 / 5e-126 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 173 / 3e-50 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 166 / 2e-47 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 156 / 1e-43 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 155 / 5e-43 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.002G256500 [exp] 114 / 2e-27 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.007G014700 [exp] 112 / 9e-27 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 110 / 6e-26 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10028359 pacid=23166053 polypeptide=Lus10028359 locus=Lus10028359.g ID=Lus10028359.BGIv1.0 annot-version=v1.0 ATGGGCACTCTTCAAGTCCATCTTCTTCTCACATTCACCCTCTTACAGTTACTCCTCCCCATCCATGGCAGCAAAACACATTGGAAAGACACAGAGGTAC TAAAGCAGTTCAAATACAGCATCGACCAAACCTCGATAACTCCAGGCTCCTGTCTCAGCTCCTGGGACTTCTCCTACGACCCATGTGATTCCCTCTTCAG CGACCACTTCACTTGTGGCTTCCGCTGCGACGCCGCCGTTTCGGGTCTCAGCCGAGTCACTGAACTCGCCCTTGACCAAGCCGGTTATTACTCAGCTTCA CTCGACTCGGTCAATTGGGAAAGCTTGCCTTACCTCCAAAGCCTCGACCTTTCCAACAATTACTTCAGCGGACCGGTTCCCGGTTCGCTATCCAACCTAA CTCGGTTGACCCGACTCGGCCTCTCGAGAAACTCTTTCTCCGGCGAGATTCCCTCTTTCCTCCCCATTAGCCTCGAAGAGCTTTCCCTCGATAACAACAA CTTACAGGGAGGAATCCCTGCAACTCTCAACGGGCTTGTTGGTTTGAAAAGGCTCGAACTTCAATCCAATAATCTATCCGGTGAGTTCCCCGAGTTGGCT TCTCTGAAAAATCTCTACTTTCTAGATGCTAGCGATAACGTCGGAATATCCGGGAATTTCCCCGCGGTTTTGCCGGCCAATTTGGTTCAAATCTCCATGA GGAACAACTCTTTACAAGGGAAATTGCCATCCAAAAGCTTCCAATTCGTTCCGTATTTGCAAGTCCTGGATCTGAGTCACAACCGACTCAGCGACTCGGT TCCTCTGACTCTGTTCGGAAGTCCTTCGCTCCAGCAGCTAACACTCTCCCACAATTCCTTCTCCTCCATCGAGGCGCCGGCGACGCTGACGACGCTGATT CAGAGCGAGCTGATCGCCGTCGACCTGAGCAACAACAACCTCAGGGGCTTTTTGCCGTCGTTCATGGCTCTGCTGCCAAAGCTCTCGGCTTTATCGCTCG AGAATAATAAATTCACCGGGGTGATACCGACCCAGTACGCGGTGAAGGCGGTTCTACCTTACGCCGGCGTTTCTCCGTTCGCGAGGCTGTTGCTGGGTGG GAATTACTTGTTCGGACCCATACCGGGTCCGCACAATAATGTAATATTGGATCAGTGTTGTACATTTTGTTAG
AA sequence Show only first row Show all	>Lus10028359 pacid=23166053 polypeptide=Lus10028359 locus=Lus10028359.g ID=Lus10028359.BGIv1.0 annot-version=v1.0 MGTLQVHLLLTFTLLQLLLPIHGSKTHWKDTEVLKQFKYSIDQTSITPGSCLSSWDFSYDPCDSLFSDHFTCGFRCDAAVSGLSRVTELALDQAGYYSAS LDSVNWESLPYLQSLDLSNNYFSGPVPGSLSNLTRLTRLGLSRNSFSGEIPSFLPISLEELSLDNNNLQGGIPATLNGLVGLKRLELQSNNLSGEFPELA SLKNLYFLDASDNVGISGNFPAVLPANLVQISMRNNSLQGKLPSKSFQFVPYLQVLDLSHNRLSDSVPLTLFGSPSLQQLTLSHNSFSSIEAPATLTTLI QSELIAVDLSNNNLRGFLPSFMALLPKLSALSLENNKFTGVIPTQYAVKAVLPYAGVSPFARLLLGGNYLFGPIPGPHNNVILDQCCTFC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66330			Leucine-rich repeat (LRR) fami...		Lus10028359 [exp]	0	1
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	1.0	0.9187
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	2.0	0.8850
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	2.4	0.8775
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	3.9	0.8629
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	6.9	0.8737
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	12.7	0.8241
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	13.3	0.8502
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	14.7	0.8375
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	15.5	0.8437
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	15.9	0.8486

Compare expression of checked genes

Lus10028359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.