Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66320 110 / 2e-28 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G51080 81 / 9e-18 GATA GATA6 GATA transcription factor 6 (.1) AT4G36240 53 / 3e-08 GATA GATA7 GATA transcription factor 7 (.1) AT4G32890 52 / 9e-08 GATA GATA9 GATA transcription factor 9 (.1) AT3G60530 43 / 7e-05 GATA GATA4 GATA transcription factor 4 (.1) AT2G45050 43 / 8e-05 GATA GATA2 GATA transcription factor 2 (.1) AT4G34680 42 / 0.0002 GATA GATA3 GATA transcription factor 3 (.1.2) AT5G25830 42 / 0.0002 GATA GATA12 GATA transcription factor 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041810 [exp] 116 / 6e-32 AT5G66320 177 / 1e-54 GATA transcription factor 5 (.1.2) Lus10002036 [exp] 47 / 3e-06 AT5G25830 129 / 3e-35 GATA transcription factor 12 (.1) Lus10038273 [exp] 46 / 1e-05 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10025829 [exp] 45 / 2e-05 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10037572 [exp] 43 / 9e-05 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10011430 [exp] 43 / 0.0001 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10042879 [exp] 42 / 0.0002 AT2G45050 147 / 1e-43 GATA transcription factor 2 (.1) Lus10028178 [exp] 40 / 0.0006 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117600 [exp] 160 / 1e-47 AT5G66320 236 / 2e-75 GATA transcription factor 5 (.1.2) Potri.007G016600 [exp] 159 / 1e-46 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.004G161500 [exp] 86 / 2e-19 AT5G66320 178 / 2e-53 GATA transcription factor 5 (.1.2) Potri.009G123400 [exp] 79 / 7e-17 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2) Potri.014G058600 [exp] 47 / 3e-06 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.006G237700 [exp] 47 / 4e-06 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.001G188500 [exp] 45 / 2e-05 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.002G142800 [exp] 44 / 3e-05 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.018G044900 [exp] 44 / 5e-05 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028360 pacid=23166061 polypeptide=Lus10028360 locus=Lus10028360.g ID=Lus10028360.BGIv1.0 annot-version=v1.0 ATGGCGTGCGTTGAAGCGGCTTTGAAAAGCAGTGTCCGTAAGGAATTGGCGGTGAAATCCACCCCTCAGGCAGCAGGATTTCTCGACGACCTTTGGGCCG TCCAGAACGGCACCGACGATTTCTCCGTCGATGAACTCCTCGATTTCTCCAACGAAGAAGACCTCGTCGCCGCCGAAGAAGAAGAAGAAGCCGGAATAAT ACTAGACTTGCCTCCAACGGCCTCCGTTTCTCCCAAAGTCGAAGAGACTAAGCGCCTTCACGGCGGTGATTTTGGGCCTGTTCCCGCCGGAGAACTTGCT GTGCCGGCGGATGACCTGGCGAGTCTGGAATGGCTGTCGCATTTTGTGGAGGACTCCAATTCGGAGTACTCGGCGCCGTTCCCCGCCGGTATTGTCCCTC AGAAGGCCAAGAGTGAAATCAATTTTGAGCCGGTGGTGGAGGAGGAGCCTTGTTTCAAGTCCCCTGTCCCGGCGAAGGCGAGAAGCAAACGGACCCGAAC AGGTATTCGGGTCTGGTCTCTCGGGTCAACAACCCTGACGGATTCCTCCTCGAGTTCAACCTCCTCTTCGTCTTCCTCTTCCAGCCCGTTGAGTTGCCCA TGTGTCATCTGCACGGCAGGTTCAAGTCAGGCAGGCTCCTACCCGAATACCGACCGGCTTGCAGCCCGACTTTCTCTAGCGAGTTGCACTCCAACCACCA CCGTAAGGTGCTGGAGATGA
AA sequence Show only first row Show all	>Lus10028360 pacid=23166061 polypeptide=Lus10028360 locus=Lus10028360.g ID=Lus10028360.BGIv1.0 annot-version=v1.0 MACVEAALKSSVRKELAVKSTPQAAGFLDDLWAVQNGTDDFSVDELLDFSNEEDLVAAEEEEEAGIILDLPPTASVSPKVEETKRLHGGDFGPVPAGELA VPADDLASLEWLSHFVEDSNSEYSAPFPAGIVPQKAKSEINFEPVVEEEPCFKSPVPAKARSKRTRTGIRVWSLGSTTLTDSSSSSTSSSSSSSSPLSCP CVICTAGSSQAGSYPNTDRLAARLSLASCTPTTTVRCWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	0	1
AT2G40070			unknown protein		Lus10035528 [exp]	1.4	0.8571
AT2G22370			unknown protein		Lus10023150 [exp]	2.2	0.8482
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10041313 [exp]	3.2	0.8540
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Lus10007168 [exp]	4.4	0.8066
AT5G14370			CCT motif family protein (.1)		Lus10014886 [exp]	5.7	0.8510
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10039715 [exp]	8.8	0.8167
AT4G03100			Rho GTPase activating protein ...		Lus10009778 [exp]	9.5	0.8244
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	9.8	0.8493
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	10.7	0.8340
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10041810 [exp]	11.2	0.7867

Compare expression of checked genes

Lus10028360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.