Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36220 649 / 0 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT5G04330 531 / 0 Cytochrome P450 superfamily protein (.1) AT3G26300 283 / 2e-89 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26310 283 / 2e-89 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G07990 283 / 2e-89 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26290 278 / 2e-87 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT3G48280 275 / 2e-86 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G26320 271 / 3e-85 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G48320 268 / 5e-84 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT3G26330 267 / 3e-83 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041811 [exp] 747 / 0 AT4G36220 667 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10025975 [exp] 716 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10014273 [exp] 708 / 0 AT4G36220 721 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10022303 [exp] 657 / 0 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10034300 [exp] 656 / 0 AT4G36220 668 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10041511 [exp] 656 / 0 AT4G36220 687 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10012582 [exp] 575 / 0 AT4G36220 578 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10000326 [exp] 515 / 0 AT4G36220 523 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Lus10016601 [exp] 327 / 2e-106 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G117500 [exp] 697 / 0 AT4G36220 728 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G016400 [exp] 687 / 0 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.009G123600 [exp] 619 / 0 AT4G36220 672 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.007G082900 [exp] 322 / 8e-105 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 320 / 6e-104 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 318 / 4e-103 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G084800 [exp] 318 / 5e-103 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 317 / 5e-102 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G083000 [exp] 315 / 7e-102 AT3G26330 368 / 8e-123 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.003G066400 [exp] 315 / 1e-101 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10028361 pacid=23166183 polypeptide=Lus10028361 locus=Lus10028361.g ID=Lus10028361.BGIv1.0 annot-version=v1.0 ATGGAATTCTTCCAACCCATCCTCTACCTAATCATCCCTCTCGTCCTCCTCCTCCTCATCTCCAGCCGCCGTCGTAGCCGCCTCCCCCTCCCGCCGGGTC CCAATGGGCTCCCGATCATCGGCAACATACTGATGATGGACCAGCTCACCCACCGTGGGCTGGCCAAGCTGGCAAAGAAGTACGGTGGAATATTCCACCT CAAGATGGGGACCAGCGTCCACGTCATCGGCGTCTCTTCCCCTGAAGTCGCGCGTGAGGTCCTCCAGGTCCACGACATCATATTCTCCAACCGCTCCGTC AACGCCGCCATTACCTACCTAACCTACGACCGGTCCGACATGGCCTTCGCCAACTACGGACCTTTCTGGCGGCAGATGCGCAAGATCTGCGTCATGAAGC TCTTCAGCCGCAAGCGGGCTGAGTCGTGGGACTCCGTCCGCGACGAGGTCGACTCCATGGTCCAGACCGTTAAGGTCAACGCTGGCCGGGCGTTGAACGT CGGGGAGCTGATTTTCTCGTTGACCATGAACATAACGTACAGGGCGGCGTTCGGGTGCAAGAACGAAGGACAGGCTGAGTTTATTAAGATACTTCAGGAG TTCTCCAAGCTTTTTGGGGCTTTTAATATTGCCGATTTTATCCCTTGCCTCGGCTGGATGGACCCACAGGGTCTTAACTCTAGGCTTGTGAAGGCTAGGT GTGATTTGGATAAGTTCATTGATAAAATCATTGACGAGCACATCGAGAAGAGAAGGCTAAACGGCAGCATACAAGCTGACGACGATCCTATCTCCGACAT GGTTGATGACTTGCTTGCTTTCTATAGCGAAGAACAAGACGCCGGCCGTGCCGATAAAGTTTCCGACGCCGACTCTCTTAAGCTCACTAAGGATAACATC AAAGGCCTCATCATGGACGTTATGTTCGGTGGGACAGAAACGGTAGCGTCGGCAATCGAGTGGGCCCTGGCAGAGTTAATGAAGAGCCCCGACGATCTAC GGCGAGTCCAGGAAGAGCTGGAAGAGGTCGTAGGACTGGACCGCCGGGTGGAAGAGAGCGACTTCGAGAAGCTGACCTTCTTCAAGTGCACGCTCAAAGA GACGCTCCGCCTCCACCCGCCGATCCCGCTCCTCCTCCACGAGACAGCGGAGGATGTTGAGGTGTCCGGCTATTTCATCCCCAAGAGGTCCCGGGTCATG GTCAACGCTTTTGCGATCGGGCGAGACCCGAACTCGTGGTCCGACCCGGATTCTTTCAAGCCGTCTAGGTTTTTGAAGGATGGGATGCCCGATTTCAAGG GGAGTAACTTCGAGTTCCTGCCGTTCGGGTCGGGTCGGAGGTCGTGCCCGGGGATGCAGCTTGGATTGTATGCACTGGAGCTAGGGGTGGCCCACCTGCT ACACTGTTTCAAGTGGGAGTTGCCGGATAGGATGAAGCCGAGTGACATGGATATGAGCGATGTTTTCGGACTCACCGCGCCACGCGCGACACGACTCGTC GCTGTGCCAACCCCGAGATTGACGTGTCTAATGTAA
AA sequence Show only first row Show all	>Lus10028361 pacid=23166183 polypeptide=Lus10028361 locus=Lus10028361.g ID=Lus10028361.BGIv1.0 annot-version=v1.0 MEFFQPILYLIIPLVLLLLISSRRRSRLPLPPGPNGLPIIGNILMMDQLTHRGLAKLAKKYGGIFHLKMGTSVHVIGVSSPEVAREVLQVHDIIFSNRSV NAAITYLTYDRSDMAFANYGPFWRQMRKICVMKLFSRKRAESWDSVRDEVDSMVQTVKVNAGRALNVGELIFSLTMNITYRAAFGCKNEGQAEFIKILQE FSKLFGAFNIADFIPCLGWMDPQGLNSRLVKARCDLDKFIDKIIDEHIEKRRLNGSIQADDDPISDMVDDLLAFYSEEQDAGRADKVSDADSLKLTKDNI KGLIMDVMFGGTETVASAIEWALAELMKSPDDLRRVQEELEEVVGLDRRVEESDFEKLTFFKCTLKETLRLHPPIPLLLHETAEDVEVSGYFIPKRSRVM VNAFAIGRDPNSWSDPDSFKPSRFLKDGMPDFKGSNFEFLPFGSGRRSCPGMQLGLYALELGVAHLLHCFKWELPDRMKPSDMDMSDVFGLTAPRATRLV AVPTPRLTCLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10028361 [exp]	0	1
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10041811 [exp]	4.4	0.9306
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10021399 [exp]	5.0	0.8223
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	8.4	0.8728
AT1G72220			RING/U-box superfamily protein...		Lus10015901 [exp]	16.6	0.8889
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10005670 [exp]	20.9	0.8882
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	24.1	0.8298
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10035532 [exp]	26.8	0.8821
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10041451 [exp]	27.7	0.8501
AT2G19130			S-locus lectin protein kinase ...		Lus10031597 [exp]	29.7	0.7721
AT1G48590			Calcium-dependent lipid-bindin...		Lus10042002 [exp]	32.6	0.8089

Compare expression of checked genes

Lus10028361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.