Plant FIBer expression Database

Lus10028362 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51100 140 / 6e-42 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041813
[exp]
315 / 7e-111 AT3G51100 175 / 3e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G117400
[exp]
172 / 1e-54 AT3G51100 216 / 3e-71 unknown protein
Potri.007G016200
[exp]
164 / 2e-51 AT3G51100 210 / 5e-69 unknown protein
PFAM info
Representative CDS sequence
>Lus10028362 pacid=23166105 polypeptide=Lus10028362 locus=Lus10028362.g ID=Lus10028362.BGIv1.0 annot-version=v1.0
ATGGAGCCGACTAAAGAATTCGATGGTGGCGGAGGCGGGGACGATCAGAAAGCTAATCAAATCCACAATCTGAAGGAAGTAAAGCGTTCAGCAGACGGAG
GAGGTTTGAAGGGAAAATCCTGCTCGGGTTACCTTTATTATACTACCGCCCTCAAATCCAACGGCAAGAATCCTCGATGCATCGGCATCCCTCGCACCCT
CCCTTCCGTGCCAAACTATCTTGGAAAAAATGAGGAGGCAGCTGGCGGAGAGGACAGAAAATTCTACTACGGGTGTGCTGGGTATTCTGTATTCATTAAG
GATGACCGTTCAGCAGATAAACAGGAGTCGAAGACACAATTACCTGTCTGTTTAGGCCTGGAGCTTTTCATTAATAGAAAACCAGTGACTGCCACGAATG
CTCCCAATCCAGCTCTTGTTCACCATAGTCCAGCTCCTGCTCACCATAGACAAGGAGTTGCGAGGGACGTGAGGAGAGTAGGGAAGGAGATAAAAGACAC
TGTTGTAGACATATTTTCCCCATATAAAAGACGTCCCAAATGA
AA sequence
>Lus10028362 pacid=23166105 polypeptide=Lus10028362 locus=Lus10028362.g ID=Lus10028362.BGIv1.0 annot-version=v1.0
MEPTKEFDGGGGGDDQKANQIHNLKEVKRSADGGGLKGKSCSGYLYYTTALKSNGKNPRCIGIPRTLPSVPNYLGKNEEAAGGEDRKFYYGCAGYSVFIK
DDRSADKQESKTQLPVCLGLELFINRKPVTATNAPNPALVHHSPAPAHHRQGVARDVRRVGKEIKDTVVDIFSPYKRRPK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51100 unknown protein Lus10028362
[exp]
0 1
AT4G14385 unknown protein Lus10003559
[exp]
3.2 0.9149
AT2G26430 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3... Lus10036509
[exp]
7.1 0.9080
AT4G08240 unknown protein Lus10009881
[exp]
11.7 0.9010
AT3G25940 TFIIB zinc-binding protein (.1... Lus10015458
[exp]
13.0 0.8936
AT1G72690 unknown protein Lus10015607
[exp]
16.3 0.9011
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Lus10039656
[exp]
19.0 0.8723
AT3G51100 unknown protein Lus10041813
[exp]
19.0 0.8761
AT3G21865 PEX22 peroxin 22 (.1) Lus10039690
[exp]
21.0 0.8876
AT5G23090 CCAAT NF-YB13 "nuclear factor Y, subunit B13... Lus10027242
[exp]
25.8 0.9054
AT3G07580 unknown protein Lus10016076
[exp]
29.2 0.9054

Lus10028362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.