Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19730 429 / 3e-151 Pectin lyase-like superfamily protein (.1) AT5G47500 309 / 4e-104 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36710 300 / 7e-100 Pectin lyase-like superfamily protein (.1) AT2G36700 276 / 8e-92 Pectin lyase-like superfamily protein (.1) AT1G05310 276 / 8e-91 Pectin lyase-like superfamily protein (.1) AT3G29090 264 / 2e-87 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT2G21610 264 / 1e-86 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G55590 263 / 6e-86 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G07430 262 / 9e-86 Pectin lyase-like superfamily protein (.1) AT5G07410 258 / 3e-84 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041815 [exp] 607 / 0 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 427 / 2e-150 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 415 / 1e-145 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 414 / 1e-145 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 331 / 5e-113 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 296 / 8e-99 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 287 / 1e-94 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 285 / 6e-94 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016605 [exp] 268 / 7e-88 AT5G55590 409 / 3e-142 QUARTET 1, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015700 [exp] 511 / 0 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 443 / 7e-157 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 323 / 2e-109 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 303 / 1e-101 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 293 / 5e-97 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 285 / 2e-94 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 274 / 2e-90 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 271 / 3e-89 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 271 / 3e-89 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 271 / 3e-89 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10028364 pacid=23166045 polypeptide=Lus10028364 locus=Lus10028364.g ID=Lus10028364.BGIv1.0 annot-version=v1.0 ATGAACAAGGTGAGGCCTTGCTTGACTTTGAAAGTGAAGAAGAAGAAACACTCACGACCGTCGAGAAGCAGAGTATTTTCAACTCTGCGTAAGGCCTTAG AGTCGATTCCAGTAGTGAATAACTGCCGAGTTGTCATCTCCATTGGCAAAGGAACATACAGGGAGAAGGTTGAGATACCGACAACAATGGCTTACATAAC CTTGAAAGGAGCTGGTACTGGGAAGACCGTCATAGAGTGGGACGATACAGCAGACAGAATTGGGGCCAATGGGCATCCTCTGGGAACTTTTGGCTCTTCA ACTTTTGCTGTCAATTCTCCTTACTTCATTGCCAAGAACATCACCTTCAAGAATAATGCGCCTCCGCCACCTTCAGGGGCACTAGGGAAGCAAGCAGTGG CGCTGAGAATATCGGGGGACAACGCGGCGTTCATAGGCTGCAAGTTCATCGGAGCACAGGACACTCTGTACGACCATCTAGGGAGGCACTACTTCAAACA CTGCTACATCGAAGGATCGGTGGACTTTGTGTTCGGGAACGGCCTGTCTCTGTACGAGAACTGCCACTTGCACGCCATAAGCAACACCTTCGGAGCTCTG ACCGCGCAGAAGAGGGAGAGCCTGCTGGAGGAAACAGGCTTCTCGTTCGTGAAATGCAAAGTGACCGGTTCCGGAGCTCTGTACCTCGGAAGGGCATGGG GGTCTTTTTCCAGAGTGGTGTTCGCTTACACTTACATGGATAAGATTATCAAGCCGCAAGGGTGGTACGACTGGGGAGATAAAAACAGGGAAATGACTGT GTTTTATGGGCAGTATAAATGTTGGGGTCCAGGAGCTAATTTTGGAGGAAGGGTTCCATGGTCCAGGGAGCTTACTGATGCCGAGGCTCAGCCATTTGTT TCACTTGGTTTCATTGATGGCCATGAGTGGCTCCATGATTTGTTGTGA
AA sequence Show only first row Show all	>Lus10028364 pacid=23166045 polypeptide=Lus10028364 locus=Lus10028364.g ID=Lus10028364.BGIv1.0 annot-version=v1.0 MNKVRPCLTLKVKKKKHSRPSRSRVFSTLRKALESIPVVNNCRVVISIGKGTYREKVEIPTTMAYITLKGAGTGKTVIEWDDTADRIGANGHPLGTFGSS TFAVNSPYFIAKNITFKNNAPPPPSGALGKQAVALRISGDNAAFIGCKFIGAQDTLYDHLGRHYFKHCYIEGSVDFVFGNGLSLYENCHLHAISNTFGAL TAQKRESLLEETGFSFVKCKVTGSGALYLGRAWGSFSRVVFAYTYMDKIIKPQGWYDWGDKNREMTVFYGQYKCWGPGANFGGRVPWSRELTDAEAQPFV SLGFIDGHEWLHDLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	0	1
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	1.4	0.9745
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10021333 [exp]	2.4	0.9673
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	2.6	0.9596
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	3.2	0.9726
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10032739 [exp]	3.9	0.9455
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	4.5	0.9651
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034475 [exp]	4.5	0.9650
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	5.5	0.9620
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	6.6	0.9521
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006667 [exp]	8.7	0.9370

Compare expression of checked genes

Lus10028364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.