Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36195 655 / 0 Serine carboxypeptidase S28 family protein (.1.2.3) AT4G36190 636 / 0 Serine carboxypeptidase S28 family protein (.1) AT2G18080 605 / 0 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT5G65760 106 / 2e-24 Serine carboxypeptidase S28 family protein (.1) AT2G24280 104 / 1e-23 alpha/beta-Hydrolases superfamily protein (.1) AT5G22860 79 / 2e-15 Serine carboxypeptidase S28 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041817 [exp] 474 / 5e-166 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1) Lus10008358 [exp] 108 / 5e-25 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10011603 [exp] 107 / 1e-24 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10005353 [exp] 100 / 4e-22 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10005354 [exp] 95 / 2e-20 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 89 / 2e-18 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021325 [exp] 89 / 2e-18 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10017002 [exp] 83 / 1e-16 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015400 [exp] 715 / 0 AT4G36195 704 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Potri.007G015300 [exp] 673 / 0 AT4G36195 701 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Potri.010G232300 [exp] 119 / 1e-28 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 105 / 5e-24 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.007G008100 [exp] 104 / 1e-23 AT5G65760 783 / 0.0 Serine carboxypeptidase S28 family protein (.1) Potri.018G018500 [exp] 103 / 3e-23 AT5G22860 522 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.006G207900 [exp] 98 / 2e-21 AT2G24280 563 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G111000 [exp] 96 / 8e-21 AT2G24280 728 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G213500 [exp] 92 / 1e-19 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 89 / 1e-18 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05577 [flax] [poplar] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Lus10028365 pacid=23166030 polypeptide=Lus10028365 locus=Lus10028365.g ID=Lus10028365.BGIv1.0 annot-version=v1.0 ATGAGGTCGCTCCTGTTGGTTGCGTCTCTGTCGTATTTTATGCTTTCAACGCTGTCTTATGGCTTTCTCGAATCTCGTGCTTTGATTAACCGCCCTCGCC TCACCGGAATCGCTGCCTCCAAGTACTTAACAACTGATGAATTGTGGTTCAGTCAGACGCTCGATCATTTCTCCCCATTTGATCATCGAAGGTTCCAGCA GCGCTACTATGAGTTCTTGGACCACTTCAGAGCTCCCAATGGACCCATCTTTCTGAAAATTTGTGGGGAAGGTCCTTGCAGTGGCATACAAAATGACTAT CTTGGTGTTCTGGCAAAGAAGTTTGGAGCTGCTGTTGTGTCCCTTGAACACCGATATTATGGAAAGAGTTCGCCCTTTAAGTCCTTAGAAACGGAAAACT TGAGATACCTTTCATCCAAGCAGGCACTCTTTGACCTGGCTATTTTTAGGCAGCATTATCAGGCAAGTGATTATGCATTTTTATCAGACTCGCTGAATGT CAAGCTTAACAGAACAGGTGTGGAAAATCCATGGTTTTTCTTTGGTGTTTCTTATCCTGGGGCTCTTAGTGCATGGTTTCGGCTGAAGTTCCCACACTTA ACATGTGGGAGTCTTGCTAGTTCGGCGGTTGTTCTCGCTGTTTATAACTACACGGAATTTGACCAGCAGATCGGTGAGTCAGCTGGTCCTGAATGTAAAG CGGCCCTTCAAGATGTCACCAAGCTTGTTGATCAAGGTCTTGCATCAAACACAGAAGCGGTGAAGTCACTGTTTGGTGCAACTGAGCTTAATATTGATGG TGATTTCCTGTATTTTCTAGCGGACGCTGCAGTTATTGGGTTTCAGTATGGGAATCCAGATGTATTATGCGATCCACTTGTTCAAGCTAAGAAGGATGGA GACGATCTGTTGGCACCATGCAAACCACCGAGGCCATATGTATCTTGCTGGTTGCTTTACACGTCTTATCTAATTGATGAACATTTTATGCAGGCTGTAT ATGCCAAGATTCTTCCGATCGGTTGTGGTTCCGATCTGTTGTGGTGGTTCCAAGTTTGTACTGAAGTTGCATACTTTCAAGTGGCTCCAGCAAATGATAG CATTCGTTCTTCAAAAGTTGACACAAGGCAAGTTTTCTCTTTTCCTTATCAGTCATCGGATGTTTCTCATTCATCAGAGTTTACAGATCTTGATCTCAAC TGGACGGCAAGATTTTACTCGATCATATATTGCAGATACCATTTGGACCTCTGCAAGAACGTTTTTGGGGAGGGAATCTATCCTGAGGTTGACGCAACGA ACATATATTATGGGGGAACAAAGATCGCAGGTTCAAAGATTGTATTTACAAATGGCTCACAAGATCCTTGGCGGCATGCATCTAAACAGATTTCTTCCTC GACAATGCCTTCGTACTTGATAACTTGTCACAACTGCGGCCATGGAACTGATCTGCGAGGATGTCCTCAATCTCCTCTAAGCATAGAAGGGAATGCAGAG AATTGCACATCTCCCGATGCAGTGCAGAAAGTAAGGCAAAAGATCATTGAACACATGGACTTGTGGTTGTCTGAGTGTGTTGCTAGTGGTAGGAACCACA TGGCAATTTAA
AA sequence Show only first row Show all	>Lus10028365 pacid=23166030 polypeptide=Lus10028365 locus=Lus10028365.g ID=Lus10028365.BGIv1.0 annot-version=v1.0 MRSLLLVASLSYFMLSTLSYGFLESRALINRPRLTGIAASKYLTTDELWFSQTLDHFSPFDHRRFQQRYYEFLDHFRAPNGPIFLKICGEGPCSGIQNDY LGVLAKKFGAAVVSLEHRYYGKSSPFKSLETENLRYLSSKQALFDLAIFRQHYQASDYAFLSDSLNVKLNRTGVENPWFFFGVSYPGALSAWFRLKFPHL TCGSLASSAVVLAVYNYTEFDQQIGESAGPECKAALQDVTKLVDQGLASNTEAVKSLFGATELNIDGDFLYFLADAAVIGFQYGNPDVLCDPLVQAKKDG DDLLAPCKPPRPYVSCWLLYTSYLIDEHFMQAVYAKILPIGCGSDLLWWFQVCTEVAYFQVAPANDSIRSSKVDTRQVFSFPYQSSDVSHSSEFTDLDLN WTARFYSIIYCRYHLDLCKNVFGEGIYPEVDATNIYYGGTKIAGSKIVFTNGSQDPWRHASKQISSSTMPSYLITCHNCGHGTDLRGCPQSPLSIEGNAE NCTSPDAVQKVRQKIIEHMDLWLSECVASGRNHMAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	0	1
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	1.7	0.9233
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	2.8	0.9306
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	3.5	0.9124
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	3.5	0.9282
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	3.9	0.9186
AT5G35460			unknown protein		Lus10021569 [exp]	4.2	0.8906
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	5.7	0.8920
AT3G18620			DHHC-type zinc finger family p...		Lus10016564 [exp]	5.8	0.8703
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	5.9	0.9113
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	8.4	0.9029

Compare expression of checked genes

Lus10028365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.