Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 97 / 5e-23 F-box/RNI-like superfamily protein (.1) AT5G02700 76 / 1e-15 F-box/RNI-like superfamily protein (.1) AT3G28410 71 / 7e-14 F-box/RNI-like superfamily protein (.1) AT4G26340 63 / 3e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56690 62 / 9e-11 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT5G53840 60 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G49030 59 / 6e-10 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT3G03030 59 / 6e-10 F-box/RNI-like superfamily protein (.1) AT5G02930 58 / 1e-09 F-box/RNI-like superfamily protein (.1) AT5G56420 57 / 4e-09 F-box/RNI-like/FBD-like domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041818 [exp] 441 / 8e-156 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10028368 [exp] 233 / 2e-78 AT1G13570 69 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 192 / 2e-58 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10035151 [exp] 191 / 8e-57 AT5G51170 306 / 7e-101 unknown protein Lus10010381 [exp] 154 / 3e-47 AT2G04230 47 / 9e-07 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10002959 [exp] 156 / 5e-46 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10028369 [exp] 150 / 3e-44 AT1G13570 66 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 154 / 6e-44 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10040686 [exp] 122 / 5e-31 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039700 [exp] 114 / 5e-29 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 107 / 1e-26 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 103 / 3e-25 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 99 / 2e-23 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.011G024200 [exp] 67 / 2e-12 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G121500 [exp] 66 / 5e-12 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.011G121400 [exp] 65 / 9e-12 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G024600 [exp] 60 / 4e-10 AT4G26350 95 / 9e-21 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.004G034500 [exp] 58 / 2e-09 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024300 [exp] 54 / 3e-08 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10028366 pacid=23166180 polypeptide=Lus10028366 locus=Lus10028366.g ID=Lus10028366.BGIv1.0 annot-version=v1.0 ATGAAGCGGCTTCGAGACTCCACCGATGTGATAGAGCAAATCCTGATGTACTTACCCATAAAGGATGCTGCCAGAACCAGCATCTTATCAAGAGACTGGC GGCATCGTTGGAGAACCATTCCTCAACTCGTGTTCGATGTGAATTTTGCAGCTTCATTCCACAACGATCACTTTCTGGACAAGAAAAAGGTCATGCTTAG CATGTACAGAGCTCTGATAGCACATGATGGCCCCATAACCAAGTTCAAGCTCGACATTCCTGGATTGAACCCATCTCCTCAGATTGATCTGTTAATGCCT TACCTCACAAGCAAACAAGTCCAAGAGCTAACCCTTCTCGTTGCCTACGACGATGACTACGCCAAACTGTGTGCCCCCTTGTTCTCAGCCATCAACTTGA GGCATCTGAAATTGCAACGTTATGAGTTCCCTGTGCCATCTTCCTTTGTGGGTTTTAATAAGCTTACTTTCCTTGAACTGAAAGGAGTAATAATACCAGA CGATTTCTTCGAGCATTCCCTTCCGATGTGTCCGGTGCTAGAAGAGTTGAGGGTTACTGATTGTGAACAGATAGAGCCTGTATTTGTATCGCATTCCCCC AAAACGCTTCTTTTCAAATCCTGCATTTGGAGAATCTTCTTCAAACATACCCCGCTTCTCTCCGTACTATCTGTCATGGATCGTTGTGGAAAATCTTATG CCATCCCTAAGCTATTCTTGGACAGCTTGTCCCAAGCACGACTTCTTATTTGTCTGATCAGGAGTTCTCCTAACTTGCGGCGACTTGCCATTCGGGTTGA AAATGGAAGGTTTTAA
AA sequence Show only first row Show all	>Lus10028366 pacid=23166180 polypeptide=Lus10028366 locus=Lus10028366.g ID=Lus10028366.BGIv1.0 annot-version=v1.0 MKRLRDSTDVIEQILMYLPIKDAARTSILSRDWRHRWRTIPQLVFDVNFAASFHNDHFLDKKKVMLSMYRALIAHDGPITKFKLDIPGLNPSPQIDLLMP YLTSKQVQELTLLVAYDDDYAKLCAPLFSAINLRHLKLQRYEFPVPSSFVGFNKLTFLELKGVIIPDDFFEHSLPMCPVLEELRVTDCEQIEPVFVSHSP KTLLFKSCIWRIFFKHTPLLSVLSVMDRCGKSYAIPKLFLDSLSQARLLICLIRSSPNLRRLAIRVENGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028366 [exp]	0	1
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Lus10020158 [exp]	1.7	0.7755
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	4.6	0.7392
AT1G06340			Plant Tudor-like protein (.1)		Lus10009266 [exp]	6.9	0.7579
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	12.0	0.7359
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	12.4	0.7065
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028369 [exp]	17.0	0.7037
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	19.9	0.7389
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	22.9	0.7309
AT3G47570			Leucine-rich repeat protein ki...		Lus10033362 [exp]	23.6	0.6822
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	24.7	0.6780

Compare expression of checked genes

Lus10028366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.