Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 66 / 2e-12 F-box/RNI-like superfamily protein (.1) AT5G56570 43 / 9e-05 Leucine-rich repeat (LRR) family protein (.1) AT5G56390 42 / 0.0002 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041818 [exp] 389 / 6e-136 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 188 / 3e-57 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10006346 [exp] 169 / 3e-50 AT1G13570 140 / 2e-37 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 150 / 1e-44 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10040686 [exp] 97 / 8e-23 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10016472 [exp] 84 / 5e-19 AT1G13570 57 / 3e-09 F-box/RNI-like superfamily protein (.1) Lus10006343 [exp] 79 / 5e-18 ND 39 / 0.002 Lus10002959 [exp] 81 / 8e-18 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 71 / 4e-14 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 80 / 3e-17 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 76 / 9e-16 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 68 / 3e-13 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 66 / 2e-12 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 58 / 9e-10 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028369 pacid=23165963 polypeptide=Lus10028369 locus=Lus10028369.g ID=Lus10028369.BGIv1.0 annot-version=v1.0 ATGTGTCCGGTGCTAGAAGAGTTGAGGGTTACTGATTGTGAACAGATAGAGCCTGTATTTGTATCGCATTCCCCCAAAACGCTTCTTTTCAAATCCTGCA TTTGGAGAATCTTCTTCAAACATACCCCGCTTCTCTCCGTACTATCTGTCACGGATCGTTGCAGACAATCTTACGCGGAGACCATTAATGAAGATAGGAA CTCGGATATGGTGGCTCTGTTTGCTTCTCTTCCTGCCCTTCAGGAACTGAATCTTGGCACTGAAATGCTGCTATTCCTTGCTGCTGACAGTCATATCCCA CGCCAGCTTCCTACAACCCTCCACCACTTGAAAGTCATCAACATACCTCAGCTATTCTTGGACAGCTTGTCCCAAGCACGACTTCTTATTTGTCTGATCA GGAGTTCTCCTAACTTGCGGCGACTCGCCATTCGGGTGATCGCTAGTCTACAAGAGCTGTTGGAACCAGAGAACAGTTGCGGAGTTTGCTATTTTGAGCG CCTCGAAGAGCTTAACATTCAGGATAGCCGCGGAACGAAAGTGGAGCTGGAGCTGGTGAGGTTTGTACTAGCCAATGCTCCACTGCTGGTTAGGGTCTTC ATTCAACCTGCAGGAAAACTGAACTCCCCAAAGAGACTGGAATTCTTGAAAGACGTGATGCTTTCCAAGCGTATTTCCAAAAAGGCGGAGGTCAAATACA CTTGA
AA sequence Show only first row Show all	>Lus10028369 pacid=23165963 polypeptide=Lus10028369 locus=Lus10028369.g ID=Lus10028369.BGIv1.0 annot-version=v1.0 MCPVLEELRVTDCEQIEPVFVSHSPKTLLFKSCIWRIFFKHTPLLSVLSVTDRCRQSYAETINEDRNSDMVALFASLPALQELNLGTEMLLFLAADSHIP RQLPTTLHHLKVINIPQLFLDSLSQARLLICLIRSSPNLRRLAIRVIASLQELLEPENSCGVCYFERLEELNIQDSRGTKVELELVRFVLANAPLLVRVF IQPAGKLNSPKRLEFLKDVMLSKRISKKAEVKYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028369 [exp]	0	1
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10033450 [exp]	8.9	0.7824
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10023171 [exp]	12.2	0.7650
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	13.0	0.7791
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028366 [exp]	17.0	0.7037
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10033663 [exp]	27.0	0.6799
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005551 [exp]	29.0	0.7604
AT4G22390			F-box associated ubiquitinatio...		Lus10030826 [exp]	31.1	0.7109
AT2G39300			unknown protein		Lus10019883 [exp]	32.7	0.7308
					Lus10015702 [exp]	35.6	0.7452
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	36.7	0.7542

Compare expression of checked genes

Lus10028369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.