Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19910 224 / 3e-76 AVA-2PE, ATVHA-C2, AVA-P2 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) AT4G34720 221 / 7e-75 ATVHA-C1, AVA-P1 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) AT4G38920 221 / 7e-75 AVA-P3, ATVHA-C3 vacuolar-type H\(+\)-ATPase C3, vacuolar-type H\(+\)-ATPase C3, vacuolar-type H(+)-ATPase C3 (.1) AT2G16510 221 / 7e-75 AVA-P1 ATPase, F0/V0 complex, subunit C protein (.1) AT1G75630 218 / 9e-74 AVA-P4, AVA-P vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4, vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (.1), vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (.2) AT2G25610 56 / 6e-10 ATPase, F0/V0 complex, subunit C protein (.1) AT4G32530 55 / 7e-10 ATPase, F0/V0 complex, subunit C protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033179 [exp] 226 / 1e-76 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10028367 [exp] 226 / 1e-76 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10041819 [exp] 226 / 1e-76 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010618 [exp] 226 / 1e-76 AT1G19910 316 / 2e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010619 [exp] 225 / 3e-76 AT1G19910 315 / 5e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10010623 [exp] 224 / 6e-76 AT1G19910 315 / 6e-112 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Lus10000347 [exp] 54 / 3e-09 AT4G32530 312 / 3e-110 ATPase, F0/V0 complex, subunit C protein (.1.2) Lus10000694 [exp] 54 / 3e-09 AT4G32530 312 / 3e-110 ATPase, F0/V0 complex, subunit C protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027200 [exp] 224 / 3e-76 AT1G19910 226 / 9e-77 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.005G235300 [exp] 223 / 1e-75 AT1G19910 225 / 2e-76 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.002G082700 [exp] 223 / 1e-75 AT1G19910 221 / 9e-75 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.007G014600 [exp] 223 / 2e-75 AT1G19910 224 / 5e-76 VACUOLAR-TYPE H+ ATPASE C2, ATPase, F0/V0 complex, subunit C protein (.1) Potri.004G163400 [exp] 221 / 7e-75 AT4G34720 224 / 4e-76 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) Potri.009G125000 [exp] 220 / 6e-74 AT4G34720 226 / 4e-76 VACUOLAR H+-PUMPING ATPASE C1, ATPase, F0/V0 complex, subunit C protein (.1) Potri.006G248700 [exp] 54 / 2e-09 AT4G32530 281 / 3e-98 ATPase, F0/V0 complex, subunit C protein (.1.2) Potri.018G032600 [exp] 54 / 3e-09 AT2G25610 249 / 8e-86 ATPase, F0/V0 complex, subunit C protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00137 [flax] [poplar] ATP-synt_C ATP synthase subunit C
Representative CDS sequence Show only first row Show all	>Lus10028370 pacid=23165957 polypeptide=Lus10028370 locus=Lus10028370.g ID=Lus10028370.BGIv1.0 annot-version=v1.0 ATGGCATCTACGTTCAGCGGCGATGAAACTGCACCCTTCTTCGGCTTCCTTGGAGCCGCAGCGGCCCTCGTCTTCTCATGTATGGGAGCTGCTTACGGGA CGGCCAAGAGCGGTGTAGGAGTCGCTTCGATGGGGGTGATGAGGCCGGAGCTTGTTATGAAGTCGATCGTTCCAGTTGTTATGGCTGGAGTGCTCGGTAT CTATGGTTTGATTATCGCTGTGATCATCAGCACTGGGATCAACCCTAAAGCCAAATCGTATTACCTTTTCGACGGCTACGCTCATCTCTCCTCCGGGTTG GCCTGTGGCCTTGCCGGACTTTCTGCTGGCATGGCCATCGGCATCGTGGGAGACGCCGGCGTCAGAGCTAATGCTCAGCAGCCAAAGCTGTTCGTGGGAA TGATTCTGATTCTCATCTTTGCTGAGGCGTTGGCATTGTATGGTCTCATTGTCGGCATCATCCTCTCTTCTCGAGCAGGTCAATCCAGGGCCGATTAA
AA sequence Show only first row Show all	>Lus10028370 pacid=23165957 polypeptide=Lus10028370 locus=Lus10028370.g ID=Lus10028370.BGIv1.0 annot-version=v1.0 MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGL ACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10028370 [exp]	0	1
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Lus10041819 [exp]	1.4	0.9019
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10003011 [exp]	2.8	0.8790
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	2.8	0.8924
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	3.5	0.8797
AT5G17190			unknown protein		Lus10031957 [exp]	4.7	0.8615
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10022418 [exp]	5.3	0.8712
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	6.3	0.8744
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10001198 [exp]	7.7	0.8080
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	7.7	0.8641
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	10.4	0.8649

Compare expression of checked genes

Lus10028370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.