Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16530 331 / 4e-113 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT1G72590 290 / 2e-97 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 65 / 8e-12 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 60 / 3e-10 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT3G43840 52 / 6e-09 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041820 [exp] 534 / 0 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10042055 [exp] 314 / 8e-107 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10018059 [exp] 158 / 2e-47 AT1G72590 190 / 4e-60 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10008951 [exp] 71 / 1e-13 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10021127 [exp] 61 / 9e-11 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 60 / 2e-10 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028869 [exp] 53 / 2e-08 AT5G16010 123 / 2e-35 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163600 [exp] 361 / 8e-125 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.009G125200 [exp] 335 / 4e-114 AT2G16530 386 / 7e-134 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.010G245200 [exp] 70 / 2e-13 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 69 / 4e-13 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 65 / 7e-12 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.016G110600 [exp] 65 / 8e-12 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 64 / 1e-11 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 63 / 3e-11 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 62 / 9e-11 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 61 / 2e-10 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10028371 pacid=23166176 polypeptide=Lus10028371 locus=Lus10028371.g ID=Lus10028371.BGIv1.0 annot-version=v1.0 ATGGCGATACGGCTCGATCGTCTGCTCGGAGCTGCGTGGTTCGCTGGCACCTTGCCAATACTGGTCGCTTCACTGCCCATCTCTAAACTGAACGCTCTCC ACCAACTCTTGCTAGGTTTCGCTAAAAGAGGCAAAATCATGAAATCGTCTTCCAATAAGTTCACAGTCCCACAGAGGGGTTTCCTGCATTTCTACGTATT AGGCTTGGTTTGGACTACTTTCTTGCTGGTGATTACTTGGAACTACGCCTCCCAAACAGCGCCGCTGGTCCCTGACCCGCTGGACTTCTCGACGGCGGCG TCCCACTTAATCGGCGGCGGTGGAGGCGGCTCCCGGTTGTTATCTTTGCACAAGACGCATTCCCGGACGGCGAAGCACAGGTATAAGATATGGGTGTCGG TGTTTTTGCTACTGTTGATGGAATCTCACGTCTTGAGGCGGCTTTTGGAGACCATTTATGTGTTCAAGTACAGCCCCTCGGCTCGTATGCACGTTCTTGG CTATCTAACTGGACTTTTTTTCTACGCTGCTGCTCCACTGTCACTCTGCCACTTTTGTGCTTTGAAGGCTCTGAATTTTACAGCTGATGAAGTTGTGGAG CTGAATGCTAAAAGCAAACAGGGTGATCCTTCGTTTGTATTCGGTGATGGGACTGATTGGAGGGCGTTTGTGAAGCCTATATTGAAGCTGGGATGGTGCC AGTGGGTTGGTGCTGCGGTTTTCTTTTGGGGATGGCTTCATCAGTTTCGATGTCATCAAATTCTGGGCTCATTGCGACGGCAGCGGAGAGAACAAACTGA TGACTATGCAATTCCTCGTGGGGATTGGTTTGAATTGGTTTCGAGCCCACATTACCTAGCCGAGATGGTCGCTAATCTTGCATTTGCAGCAGCAGAGACG CAGAGGTGGTACTTACACAAGTTTGAGGAGTATCCTCGCAATCGACGAGCATTACTTCCGTTTATTTACTGA
AA sequence Show only first row Show all	>Lus10028371 pacid=23166176 polypeptide=Lus10028371 locus=Lus10028371.g ID=Lus10028371.BGIv1.0 annot-version=v1.0 MAIRLDRLLGAAWFAGTLPILVASLPISKLNALHQLLLGFAKRGKIMKSSSNKFTVPQRGFLHFYVLGLVWTTFLLVITWNYASQTAPLVPDPLDFSTAA SHLIGGGGGGSRLLSLHKTHSRTAKHRYKIWVSVFLLLLMESHVLRRLLETIYVFKYSPSARMHVLGYLTGLFFYAAAPLSLCHFCALKALNFTADEVVE LNAKSKQGDPSFVFGDGTDWRAFVKPILKLGWCQWVGAAVFFWGWLHQFRCHQILGSLRRQRREQTDDYAIPRGDWFELVSSPHYLAEMVANLAFAAAET QRWYLHKFEEYPRNRRALLPFIY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10028371 [exp]	0	1
AT1G14570			UBX domain-containing protein ...		Lus10039137 [exp]	4.2	0.7964
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	6.2	0.8203
AT2G40116			Phosphoinositide-specific phos...		Lus10009894 [exp]	15.5	0.7650
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	21.9	0.7989
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	25.0	0.7714
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014547 [exp]	26.4	0.7896
AT1G16560			Per1-like family protein (.1.2...		Lus10015006 [exp]	32.7	0.7722
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	35.0	0.7809
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10039457 [exp]	36.5	0.7805
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10018698 [exp]	42.5	0.7710

Compare expression of checked genes

Lus10028371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.