Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66280 519 / 0 GMD1 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) AT3G51160 512 / 0 GMD2, MUR_1, MUR1 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47650 55 / 2e-08 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 53 / 6e-08 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G28760 52 / 2e-07 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 48 / 2e-06 UXS5 UDP-XYL synthase 5 (.1.2) AT3G53520 48 / 3e-06 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT5G59290 47 / 5e-06 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041823 [exp] 553 / 0 AT5G66280 677 / 0.0 "GDP-D-mannose 4,6-dehydratase 1", GDP-D-mannose 4,6-dehydratase 1 (.1) Lus10030368 [exp] 59 / 1e-09 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 57 / 6e-09 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 55 / 3e-08 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10015038 [exp] 54 / 5e-08 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10007875 [exp] 50 / 4e-07 AT3G62830 352 / 4e-122 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10025293 [exp] 49 / 2e-06 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10037499 [exp] 49 / 3e-06 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 46 / 1e-05 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013900 [exp] 525 / 0 AT3G51160 670 / 0.0 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G116200 [exp] 519 / 0 AT3G51160 661 / 0.0 MURUS 1, GDP-D-MANNOSE-4,6-DEHYDRATASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G204400 [exp] 57 / 3e-09 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 56 / 9e-09 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G214000 [exp] 49 / 1e-06 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.001G237200 [exp] 48 / 3e-06 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.016G080500 [exp] 46 / 1e-05 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.008G053100 [exp] 43 / 0.0001 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 42 / 0.0004 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10028373 pacid=23166106 polypeptide=Lus10028373 locus=Lus10028373.g ID=Lus10028373.BGIv1.0 annot-version=v1.0 ATGGACGACGAGGTCTACAACCTCGCCGCCCAGTCACACGTGGCCGTCTCCTTCGAGATCCCTGACTACCCCGCCGACGTTGTGGCCACGGGAGCCCTCC GCCTCCTCGAGGCGGTCAGATCTCACATCCAGGACACCGGCCGCGCTCACATCCGGTATTACCAGGCTGGATCGTCCGAGATGTTCGGATCCACTCCGCC TCCTCAATCGGAGACCACTCCCTTCCACCCTAGATCCCCTTACGCTGCATCCAAATGCGCTGCGCATTGGTACACTGTCAATTACAGGGAAGCGTACGGT CTGTACGCCTGCAACGGGATCTTGTTCAATCACGAATCGCCGAGGAGAGGGGAGAATTTCGTGACGAGGAAGATCACGAGAGCCGTCGGGAGGATCAAGG TCGGACTGCAGACGAAAGTGTACTTGGGGAATCTGCAGGCGTCGAGGGATTGGGGTTTCGCTGGAGACTATGTTGAGGCGATGTGGTTGATGTTGCAGCA GGAAAAGCCTGACGACTACGTGGTGGCTACTGAGGAATCGCACAGCGTTCAGGAGTTTCTGGAGTTGGCGTTTGGATCAGTGGGGCTGAACTGGAAGGAT CACGTTGAGATCGACAAGAAGTATTTCAGGCCGGCGGAAGTTGATAACCTGAAGGGCGACGCTAGCAAAGCCAAGACGGTGTTGGGATGGAAGCCCAAGG TTGGATTCGAGAAGCTGGTGAAGATGATGGTGGATGAAGACATTGAGTTGGCCAAAAGGGAGAAAGTGCTGGTTGATGCTGGTTACATGGATGCCCAGCA GCAGCCTTGA
AA sequence Show only first row Show all	>Lus10028373 pacid=23166106 polypeptide=Lus10028373 locus=Lus10028373.g ID=Lus10028373.BGIv1.0 annot-version=v1.0 MDDEVYNLAAQSHVAVSFEIPDYPADVVATGALRLLEAVRSHIQDTGRAHIRYYQAGSSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYG LYACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQTKVYLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHSVQEFLELAFGSVGLNWKD HVEIDKKYFRPAEVDNLKGDASKAKTVLGWKPKVGFEKLVKMMVDEDIELAKREKVLVDAGYMDAQQQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66280		GMD1	"GDP-D-mannose 4,6-dehydratase...		Lus10028373 [exp]	0	1
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	2.0	0.9465
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Lus10036887 [exp]	3.5	0.9415
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10036886 [exp]	5.2	0.9368
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	7.3	0.9103
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	7.7	0.9141
AT3G10080			RmlC-like cupins superfamily p...		Lus10014192 [exp]	8.0	0.8944
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023945 [exp]	8.2	0.8182
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10037096 [exp]	8.9	0.9237
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	9.5	0.8776
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	9.9	0.9098

Compare expression of checked genes

Lus10028373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.