Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35260 602 / 0 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 590 / 0 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 581 / 0 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT5G03290 314 / 4e-105 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 300 / 9e-100 IDH-VI isocitrate dehydrogenase VI (.1) AT1G32480 281 / 2e-94 IDH-IV isocitrate dehydrogenase IV (.1) AT1G80560 105 / 4e-25 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT5G14200 103 / 3e-24 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G31180 99 / 1e-22 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041824 [exp] 670 / 0 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 575 / 0 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 507 / 0 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10013806 [exp] 310 / 2e-103 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 310 / 2e-103 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 309 / 3e-103 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 308 / 1e-102 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10030344 [exp] 103 / 5e-24 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 92 / 2e-20 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G064000 [exp] 620 / 0 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.005G099600 [exp] 617 / 0 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 607 / 0 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 605 / 0 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.006G126700 [exp] 310 / 1e-103 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 309 / 3e-103 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.001G185600 [exp] 109 / 2e-26 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10028374 pacid=23166070 polypeptide=Lus10028374 locus=Lus10028374.g ID=Lus10028374.BGIv1.0 annot-version=v1.0 ATGGCTAAGAGATCGGTTCCTCTCCTTAAGCAACTCCTCTCCTCCTCCACCTCCTCTCTCCGCGACTCATGCTCGTCTCGCCTCACCACTCAACGATCCG TCACCTACATGCCCCGTCCCGGCGACGGTACTCCACGCGCCGTCACTTTGATTCCCGGTGATGGAATCGGACCTCTCGTCACAGGCGCCGTCGAGCAAGT CATGGAGGCGATGCACGCTCCTGTCTACTTCGAGCGCTACGAAGTCCACGGGGACATGAAAAAGGTGCCGCAAGAGGTCCTCGATTCGATTAAGAAGAAC AAGGTCTGCTTAAAAGGAGGACTTGCCACTCCCATGGGAGGAGGTGTTAGTTCTTTGAACGTTCAGCTGAGGAAGGAGCTTGATTTGTACGCTTCACTGG TGAATTGCTTCAATCTTCCTGGATTGCCTACTCGCCACGAGAATGTTGACATCGTCGTGATTAGAGAGAATACCGAGGGTGAGTACGCCGGCCTGGAGCA CGAGGTCGTCCCCGGTGTGGTCGAGAGCCTCAAGGTGATTACGAAGTTCTGCTCAGAGAGGATTGCCAAGTACGCTTTCGAGTATGCTTACCTGAACAAC AGGAAGAAAGTGACTGCTGTCCACAAGGCAAACATCATGAAGCTTGCTGATGGCTTGTTCTTGGAGTCTTGCCGAGAGGTTGCTACCAAATATCCTGGTA TCAAATACAACGAAATCATCGTGGATAATTGCTGTATGCAACTTGTTTCCAAGCCTGAGCAGTTCGACGTCATGGTCACACCTAATCTCTATGGAAATCT AGTTGCAAACACAGCAGCAGGTATTGCTGGTGGCACCGGAGTCATGCCTGGAGGTAATGTTGGAGCTGACCATGCAGTGTTCGAGCAAGGTGCTTCGGCA GGAAATGTGGGGAATGACAAACTAACGGAGCAGAAGAAGGCGAACCCAGTAGCTCTGCTGCTATCATCAGCCATGATGCTAAGGCATCTTCAGTTCCCAT CGTTCGCCGATCGATTGGAGACTGCTGTGGTGGGAGTGATTTCAGAGGGCAAGACCAGGACCAAGGATTTGGGAGGCACTAGTACCACCCAAGAAGTCGT TGATGCCGTCATAGCGGCATTGAAGAACTGA
AA sequence Show only first row Show all	>Lus10028374 pacid=23166070 polypeptide=Lus10028374 locus=Lus10028374.g ID=Lus10028374.BGIv1.0 annot-version=v1.0 MAKRSVPLLKQLLSSSTSSLRDSCSSRLTTQRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGDMKKVPQEVLDSIKKN KVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNN RKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASA GNVGNDKLTEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVVGVISEGKTRTKDLGGTSTTQEVVDAVIAALKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10028374 [exp]	0	1
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10036999 [exp]	2.8	0.9055
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10037129 [exp]	4.5	0.8885
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	7.9	0.8951
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10028977 [exp]	8.4	0.8872
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10019323 [exp]	10.7	0.8832
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10022152 [exp]	10.7	0.8584
AT5G08680			ATP synthase alpha/beta family...		Lus10035263 [exp]	12.2	0.8980
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10009288 [exp]	13.8	0.7872
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10027491 [exp]	15.6	0.8689
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	20.3	0.8594

Compare expression of checked genes

Lus10028374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.