Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17650 791 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 743 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT5G16340 588 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 582 / 0 AAE5 acyl activating enzyme 5 (.1) AT1G66120 572 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 569 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G76290 561 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 558 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G21530 553 / 0 AMP-dependent synthetase and ligase family protein (.1.2) AT1G75960 551 / 0 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016011 [exp] 748 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10012266 [exp] 642 / 0 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10007369 [exp] 596 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 582 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10037734 [exp] 578 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 577 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 575 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016870 [exp] 574 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10010956 [exp] 572 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099500 [exp] 856 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G010600 [exp] 789 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 782 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G102901 [exp] 620 / 0 AT1G20560 608 / 0.0 acyl activating enzyme 1 (.1.2) Potri.007G059401 [exp] 614 / 0 AT1G20560 594 / 0.0 acyl activating enzyme 1 (.1.2) Potri.019G067800 [exp] 593 / 0 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.017G138350 [exp] 588 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 587 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138451 [exp] 585 / 0 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.004G082000 [exp] 583 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10028375 pacid=23166189 polypeptide=Lus10028375 locus=Lus10028375.g ID=Lus10028375.BGIv1.0 annot-version=v1.0 ATGGAACAGTCTTCCAGTTCCAGCCCACAATTGCAGCGTTTGACTTTACAAATTGCTCAACCATCTTTCTCTCCTGCGCCACCTCCCACTATGAGGAATC TCTTCTTCAGGAGGAAACAGTTATGGATGATAAGCATTCTCTCTCTCCGACGATCATCGGGGTCCGCTTTTCGCCGTTTCTCCTCCCATCTCGCCGGCGA CGACGTCGATCATGCATCAGACTCATGGAAATCGATGGAAGGCCTGCTCCGCTGCTCAGCAAATCACGTACCTCTCTCCCCTATCAGCTTTCTCCAGAGA TCCGCCAAGGTCTACAGAGACCGGACTTCGCTCGTGTACGGCGCCGTCAAGTACACCTGGAGTGAGACCCACCGCCGCTGCGTCCAGCTCGCCTCTGCTC TGTCCCACTTGGGTATTTCCCCTGGAGATGTGGTGGCAACACTAGCACCTAATGTCCCGGCAATGTACGAGTTACATTTCGCGGTACCAATGGCCGGAGC AGTACTCTGTACTCTCAATTCTCGGCATGACTCGAACATGGTGTCAATCCTACTCAAACATTCAGAATCCAAGGCCGTATTTGTCGACATTCAATTCCTC AACGTCGCTAAAGGAGCTTTCCATCTCCTCTCGCAAAACGGTGTCAAACCTCCAACGCTAGTCATAATCCACGATGATTCTACTGATCATGACGATCCAT CAGTTCCTGATTCCCTAGATTACGAAACACTATTGGAAAGTGGGGATACCGGGTTCGAAATCATACGCCCCAATACCGAATTCGATCCGATCAGCATCAA CTACACTTCAGGCACAACATCAAGACCCAAGGGAGTGGTGTACAGCCACAGAGGAGCATATCTCAATTCCCTTGCTACTCTTTTCCTCCATGAAATCAGC TCCACCCCTGTTTACCTATGGACAGTTCCTCTGTTCCATTGTAATGGGTGGTGCCTACCCTGGGGGATTGCAGCTCAAGGAGGCACAAATATCTGCCTCA GAAAGGTCACTCCAAAGGCAATCTTTGACAACATAGAAGTCCACAATGTGACTCATTTGGGAGGCGCACCAACCGTGCTGAACATGATCGCGAACTCTTG CATTCACGACCAAAAGCCACTTCCTCACAAGGTGGGAGTGGCTACAGGAGGCTCACCGCCTCCTCGAAAAGTCATTTCGAAGATGGAGGAGTTAGGTTTC CGCGTGACTCATTTATACGGCTTAACCGAAGTGTACGGTCCCGCAACTTATTGCGTCTGGAAACCCGAATGGGACAGTTTACCTCTCGAAGAGAGGGCGA ATTTGAAAGCGAGACAAGGAATGCAGCACGTTGGAATGGAAGATGTCGATGTAAAAAATCCCGAGACATTGGAATCCGTACCTCCCGATGGTGAAACCAT GGGGGAGGTTATGTTCAGAGGGAATACAGTGATGAGTGGATACTTCAAAGATGTGGAAGCGACTCAGAAGGCTTTCGAAGGCGGGTGGTTTCGAAGCGGG GATCTTGCTGTTAGGCATTCGGATGGATATATTGAAGTGAAGGATCGTTTGAAGGATATTATAATTTCTGGAGGGGAGAATATTTGTACGATTGAGGTGG AAACAGTATTGTACAGTCATCCGGCGGTTGATGAGGCTGCCGTGGTTGCTCAGCCGCATGATCATTGGGGGCAGACTCCCTGTGCGTTTGTGCAGCTGAA AGAAGGGTTTGATGATATGGATGCTGGTGATATAATTGAGTTCTGTAGAAGTAAGTTGCCTCACTATATGGCTCCGAGGACGGTCATTTTTGAGGAGTTG CCGAGAACCTCGACTGGGAAAGTGCAGAAGTTTATATTGAGGGAGAAGGCAAAAGCCTTTCCTATGGCTAAATGA
AA sequence Show only first row Show all	>Lus10028375 pacid=23166189 polypeptide=Lus10028375 locus=Lus10028375.g ID=Lus10028375.BGIv1.0 annot-version=v1.0 MEQSSSSSPQLQRLTLQIAQPSFSPAPPPTMRNLFFRRKQLWMISILSLRRSSGSAFRRFSSHLAGDDVDHASDSWKSMEGLLRCSANHVPLSPISFLQR SAKVYRDRTSLVYGAVKYTWSETHRRCVQLASALSHLGISPGDVVATLAPNVPAMYELHFAVPMAGAVLCTLNSRHDSNMVSILLKHSESKAVFVDIQFL NVAKGAFHLLSQNGVKPPTLVIIHDDSTDHDDPSVPDSLDYETLLESGDTGFEIIRPNTEFDPISINYTSGTTSRPKGVVYSHRGAYLNSLATLFLHEIS STPVYLWTVPLFHCNGWCLPWGIAAQGGTNICLRKVTPKAIFDNIEVHNVTHLGGAPTVLNMIANSCIHDQKPLPHKVGVATGGSPPPRKVISKMEELGF RVTHLYGLTEVYGPATYCVWKPEWDSLPLEERANLKARQGMQHVGMEDVDVKNPETLESVPPDGETMGEVMFRGNTVMSGYFKDVEATQKAFEGGWFRSG DLAVRHSDGYIEVKDRLKDIIISGGENICTIEVETVLYSHPAVDEAAVVAQPHDHWGQTPCAFVQLKEGFDDMDAGDIIEFCRSKLPHYMAPRTVIFEEL PRTSTGKVQKFILREKAKAFPMAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17650			AMP-dependent synthetase and l...		Lus10028375 [exp]	0	1
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000874 [exp]	1.0	0.9251
AT5G10190			Major facilitator superfamily ...		Lus10038972 [exp]	7.2	0.9026
AT1G18390			Protein kinase superfamily pro...		Lus10022432 [exp]	7.9	0.8858
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	8.9	0.9078
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10031093 [exp]	9.5	0.8965
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Lus10002711 [exp]	17.2	0.8772
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10010489 [exp]	17.3	0.8925
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10000451 [exp]	19.4	0.8888
AT5G49760			Leucine-rich repeat protein ki...		Lus10012159 [exp]	21.5	0.8666
AT5G15270			RNA-binding KH domain-containi...		Lus10036767 [exp]	22.6	0.9004

Compare expression of checked genes

Lus10028375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.