Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51440 380 / 1e-131 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G51430 379 / 3e-131 SSL5, YLS2 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G51450 376 / 3e-130 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G51420 359 / 2e-123 ATSSL4 strictosidine synthase-like 4 (.1) AT5G22020 145 / 3e-40 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 142 / 9e-39 SSL3 strictosidine synthase-like 3 (.1) AT3G59530 135 / 2e-36 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57020 122 / 8e-32 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT3G57030 119 / 2e-30 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G41300 118 / 4e-30 SSL1 strictosidine synthase-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041827 [exp] 620 / 0 AT3G51440 390 / 6e-135 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10013370 [exp] 142 / 5e-39 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10008151 [exp] 139 / 2e-37 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10008451 [exp] 137 / 8e-37 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10019377 [exp] 137 / 1e-36 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10009646 [exp] 129 / 1e-33 AT1G74020 207 / 7e-63 strictosidine synthase 2 (.1) Lus10009014 [exp] 129 / 4e-33 AT1G74020 201 / 8e-59 strictosidine synthase 2 (.1) Lus10006331 [exp] 118 / 2e-30 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10012095 [exp] 114 / 1e-28 AT2G41290 291 / 2e-96 strictosidine synthase-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099400 [exp] 427 / 3e-147 AT3G51430 397 / 1e-134 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.006G140500 [exp] 174 / 3e-51 AT3G51430 170 / 2e-49 YELLOW-LEAF-SPECIFIC GENE 2, STRICTOSIDINE SYNTHASE-LIKE 5, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.001G214500 [exp] 152 / 1e-42 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.017G027600 [exp] 140 / 7e-38 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.007G130700 [exp] 136 / 1e-36 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.006G040900 [exp] 133 / 1e-35 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 119 / 1e-30 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.012G046200 [exp] 117 / 2e-30 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.008G109966 [exp] 117 / 6e-30 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.T015518 [exp] 117 / 6e-30 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10028376 pacid=23166062 polypeptide=Lus10028376 locus=Lus10028376.g ID=Lus10028376.BGIv1.0 annot-version=v1.0 ATGAACCTCTCACTCCACGAGTTGACTCGGCCCTCCCTGAAACCGCCATCCAAAAACAACAACATCCTCAAAAGCTTCGAGTTAGTAGGTCAAGGTCAGC TCAACGAACCAGAGGACATCGCCTACAACGCCGAGTCTGGAGTCATCTACACCGGGTGCGCTGACGGATGGATCAAGCAAGTCACGGTCAATGAATCAGT CGGCGATATAACCGTGTTGAGTTGGGTCAACACCGGTGGCAGACCACTCGGACTCGCCCTATACCTAGTTAACCGCGATTTGATCCTAGCCGATGCGTTT AAGGGGCTGCTGAGAGTGAGTGGCAGGGACGGAGGAATCGAGCTTCTGACGGACGAAGCAGAGGGAGTGAAATTCAAGTTGACGGACGCCGTAGCCATAG ATGCAGAGGATGGATCTTTGTATTTCACGGATGCTTCTTATGAGTATACCGTGGCTGATTCCGCAGTCGACATTTTGGGAGGGAAGCCCCATGGTCGTCT GCTGAGATATGATCCTGTGACTAAGCAGACTACAGTTATGCTGAGAGATCTCTATTTCGCTAATGGAATCGAGATTTCGCCTGATCAACAATCCCTCGTC TTCTGCGAAACACCCATGAGAAGGTGTAGAAAATATTACATCAAAGGGGAAAAGAAGGGGAATGTGGAGAAATTTTCTGATAATCTGCCTGGATTGCCTG ATAACATCCATTATGATGGTCACGGACATTACTGGATTGCATTCCCCGCGGGAATTACTGCAGAGTTAGAGTTCTCGTTGAAACAGCCTCTTCGCAGGAA GGCAATAGTAATGTTCGAAAAGTACATAAAACCACTGCACATGGAGAAGAACAGCGGGGTTTCCATGGTGGATTTGGATGGAAAACCAGTTGCTCACTAC AATGATGCTGAACTTAGCTTCATCACCACTGGATACAAGATCGGAAATCATTTGTATCTTGGCAACCTCATCCATGGCCACATCTTTCGCCTTGATCTTG CCAAGCATCCAGCTCAACCCACTGCATTATAG
AA sequence Show only first row Show all	>Lus10028376 pacid=23166062 polypeptide=Lus10028376 locus=Lus10028376.g ID=Lus10028376.BGIv1.0 annot-version=v1.0 MNLSLHELTRPSLKPPSKNNNILKSFELVGQGQLNEPEDIAYNAESGVIYTGCADGWIKQVTVNESVGDITVLSWVNTGGRPLGLALYLVNRDLILADAF KGLLRVSGRDGGIELLTDEAEGVKFKLTDAVAIDAEDGSLYFTDASYEYTVADSAVDILGGKPHGRLLRYDPVTKQTTVMLRDLYFANGIEISPDQQSLV FCETPMRRCRKYYIKGEKKGNVEKFSDNLPGLPDNIHYDGHGHYWIAFPAGITAELEFSLKQPLRRKAIVMFEKYIKPLHMEKNSGVSMVDLDGKPVAHY NDAELSFITTGYKIGNHLYLGNLIHGHIFRLDLAKHPAQPTAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Lus10028376 [exp]	0	1
AT4G18950			Integrin-linked protein kinase...		Lus10029277 [exp]	2.6	0.7840
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	2.8	0.8503
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10005462 [exp]	4.7	0.8168
AT4G01400			unknown protein		Lus10012607 [exp]	5.3	0.7976
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	5.7	0.8161
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10001656 [exp]	10.2	0.7934
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	14.3	0.7932
AT1G27070			5'-AMP-activated protein kinas...		Lus10037220 [exp]	15.2	0.7392
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Lus10033826 [exp]	15.6	0.7627
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	16.7	0.7745

Compare expression of checked genes

Lus10028376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.