Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12500 384 / 7e-134 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT4G01700 281 / 5e-94 Chitinase family protein (.1) AT1G02360 262 / 5e-87 Chitinase family protein (.1) AT1G05850 178 / 2e-53 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G16920 169 / 9e-50 ATCTL2 chitinase-like protein 2 (.1) AT2G43610 164 / 2e-48 Chitinase family protein (.1) AT2G43620 161 / 2e-47 Chitinase family protein (.1) AT3G54420 155 / 4e-45 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 148 / 1e-42 Chitinase family protein (.1) AT2G43570 139 / 4e-39 CHI "chitinase, putative", chitinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041830 [exp] 591 / 0 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10009968 [exp] 269 / 1e-89 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10038026 [exp] 268 / 5e-89 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10000193 [exp] 248 / 3e-83 AT3G12500 191 / 2e-61 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10041831 [exp] 243 / 2e-81 AT3G12500 192 / 1e-61 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10037737 [exp] 176 / 2e-52 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10037430 [exp] 172 / 5e-51 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041278 [exp] 172 / 5e-51 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037428 [exp] 172 / 6e-51 AT1G05850 489 / 1e-175 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141700 [exp] 382 / 3e-133 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182000 [exp] 381 / 7e-133 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 335 / 6e-115 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 316 / 1e-108 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 318 / 5e-108 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142000 [exp] 316 / 2e-107 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.002G186500 [exp] 287 / 2e-96 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.014G111800 [exp] 283 / 4e-95 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182100 [exp] 261 / 2e-85 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.010G141600 [exp] 181 / 9e-55 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I CL0037 [flax] [poplar] PF00187 [flax] [poplar] Chitin_bind_1 Chitin recognition protein
Representative CDS sequence Show only first row Show all	>Lus10028377 pacid=23166174 polypeptide=Lus10028377 locus=Lus10028377.g ID=Lus10028377.BGIv1.0 annot-version=v1.0 ATGGAACGTTCAATCCGAGCCAGTACTCCTCCTCTAACTCTCCTAGTTACATTTTCCCTCTTGTTCATAGCTGCCACCGCACAGAACTGCGGGAGCCAAG CAGGGAACGCGGTATGTCCGGGCGGCCTATGCTGCAGCCGGTTCGGCTGGTGCGGCAACACTCCGGATCACTGCACAAATGGCTGCCAGAGCCAATGTAC TCCACCAGGTGGTGGGCCCACACCGTCCGGAGGAGGTGACGTGGGGTCCATAATCACCCCAGCAATCTTCGAGGATATGCTCAAGCACCGTAACGACGGT GCTTGCGAGGCTAGAGGGTTCTACAACTACAATGCTTTCATTGCTACTGCTGGGTCCTTCAATGGATTTGACAACAGGTCCTTCAACGGATTTGGCACCA CCGGTGACCTCGACACCCGTAAGAAGGAGCTCGCCGCTTTCTTGGCCCAGACCTCCCACGAAACCACCGGCGGATGGCCGACAGCGCCTGACGGCCAATT TGCGTGGGGATATTGTTTCATTAGAGAAACAAACCGCTTAACTTATTGCTCATCCAATGAATGGCCTTGCCCTGCTGGCAGGCAATATTACGGCAGAGGA CCCATCCAACTTACTCACAACTACAATTATGGGCAGGCAGGCCGCGCAATTTCACAGGACCTGATTAACAACCCGGATTTGGTGGCGACCAATGCCGAGA TATCATTCCGAACAGCAATTTGGTTCTGGATGACTCCTCAGTCCAATAAGCCGTCCAGCCACAGCGTGATTGTCGGGCAGTGGAGTCCATCTGCGGCCGA CAGGGCGGCCAACAGAGTTCCCGGCTACGGGGTCATCACCAACATTATCAACGGCGGTCTTGAATGTGGACGTGGCGCCGACCCACGTGTGGCTAATAGG ATTGGGTTCTACCAGAGGTACTGCTCCATCCTCGGAGTCAACCCTGGCGGGAACCTCGACTGCAACAATCAAACCCCCTTCGCCTAG
AA sequence Show only first row Show all	>Lus10028377 pacid=23166174 polypeptide=Lus10028377 locus=Lus10028377.g ID=Lus10028377.BGIv1.0 annot-version=v1.0 MERSIRASTPPLTLLVTFSLLFIAATAQNCGSQAGNAVCPGGLCCSRFGWCGNTPDHCTNGCQSQCTPPGGGPTPSGGGDVGSIITPAIFEDMLKHRNDG ACEARGFYNYNAFIATAGSFNGFDNRSFNGFGTTGDLDTRKKELAAFLAQTSHETTGGWPTAPDGQFAWGYCFIRETNRLTYCSSNEWPCPAGRQYYGRG PIQLTHNYNYGQAGRAISQDLINNPDLVATNAEISFRTAIWFWMTPQSNKPSSHSVIVGQWSPSAADRAANRVPGYGVITNIINGGLECGRGADPRVANR IGFYQRYCSILGVNPGGNLDCNNQTPFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028377 [exp]	0	1
AT4G37290			unknown protein		Lus10010255 [exp]	1.0	0.9982
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	2.4	0.9970
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	3.0	0.9962
AT1G47670			Transmembrane amino acid trans...		Lus10022641 [exp]	3.7	0.9914
AT4G37290			unknown protein		Lus10019310 [exp]	4.0	0.9961
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025901 [exp]	4.4	0.9898
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	6.0	0.9939
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	6.3	0.9948
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	7.0	0.9932
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10019060 [exp]	9.2	0.9875

Compare expression of checked genes

Lus10028377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.