Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12500 114 / 2e-31 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT4G01700 79 / 2e-18 Chitinase family protein (.1) AT1G02360 65 / 2e-13 Chitinase family protein (.1) AT2G43610 63 / 1e-12 Chitinase family protein (.1) AT2G43620 58 / 9e-11 Chitinase family protein (.1) AT1G56680 55 / 1e-09 Chitinase family protein (.1) AT2G43570 53 / 6e-09 CHI "chitinase, putative", chitinase, putative (.1) AT1G05850 49 / 2e-07 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G54420 45 / 2e-06 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43600 44 / 7e-06 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028377 [exp] 156 / 1e-47 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10041830 [exp] 154 / 6e-47 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10041829 [exp] 105 / 3e-30 AT3G12500 119 / 2e-33 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10009968 [exp] 75 / 5e-17 AT1G02360 409 / 1e-145 Chitinase family protein (.1) Lus10038026 [exp] 73 / 3e-16 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10000453 [exp] 51 / 2e-08 AT3G54420 382 / 3e-135 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010862 [exp] 50 / 3e-08 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10010861 [exp] 50 / 3e-08 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10037737 [exp] 50 / 5e-08 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G182000 [exp] 113 / 3e-31 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 109 / 6e-30 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142000 [exp] 103 / 2e-27 AT3G12500 346 / 6e-119 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142300 [exp] 103 / 2e-27 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 93 / 2e-23 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 84 / 2e-20 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.002G186500 [exp] 82 / 8e-20 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.014G111800 [exp] 82 / 8e-20 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.004G182100 [exp] 76 / 5e-17 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.019G093900 [exp] 62 / 2e-12 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10028378 pacid=23166022 polypeptide=Lus10028378 locus=Lus10028378.g ID=Lus10028378.BGIv1.0 annot-version=v1.0 ATGCTGCAGCCAGTGGGGATGGTGCGGCAACACCCCGAACACTGCACAACTGGCTGCCAGAGCCAATGTACCCAATCAAATGGTGGTGGTGGGGCCACCC CAAACCAGACTCCTTCCGGAGGCGGTGACGTGGGGTCCATAATCACACCGGTGATGTTCGAGGATATGCTCAAGCACCGTAACGACGGTGCTTGCGAGGC TAGAGGGTTCTACAACTACAATGCTTTCATTGCTACTGCTGGGTCCTTCAACGGATTTGACACCACTGGTGACCTTAACACCCGTAAGAAAGAGCTTGCC GCTTTCTTGGGCCAGACCTCTCACGAAACCAATGGTGGATGGCCGACGGCGAATTTGTGTGGGGGTACTGTTTCATTAAAGAGAGAAATCGGTTAA
AA sequence Show only first row Show all	>Lus10028378 pacid=23166022 polypeptide=Lus10028378 locus=Lus10028378.g ID=Lus10028378.BGIv1.0 annot-version=v1.0 MLQPVGMVRQHPEHCTTGCQSQCTQSNGGGGATPNQTPSGGGDVGSIITPVMFEDMLKHRNDGACEARGFYNYNAFIATAGSFNGFDTTGDLNTRKKELA AFLGQTSHETNGGWPTANLCGGTVSLKREIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10028378 [exp]	0	1
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	3.2	0.9885
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10036396 [exp]	3.5	0.9892
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10027481 [exp]	3.9	0.9796
AT5G67550			unknown protein		Lus10025583 [exp]	3.9	0.9884
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	4.9	0.9811
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	8.1	0.9753
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030828 [exp]	10.2	0.9593
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034817 [exp]	11.7	0.9794
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023282 [exp]	15.6	0.9553
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023280 [exp]	16.7	0.9762

Compare expression of checked genes

Lus10028378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.