Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17670 532 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G53700 179 / 3e-49 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 173 / 3e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 170 / 1e-46 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 168 / 1e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G09900 166 / 2e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62930 163 / 3e-44 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 163 / 4e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 160 / 3e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 160 / 4e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041832 [exp] 846 / 0 AT2G17670 548 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009201 [exp] 165 / 5e-47 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10006373 [exp] 172 / 1e-46 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 172 / 1e-46 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 163 / 1e-43 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 160 / 4e-43 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 159 / 1e-42 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 157 / 6e-42 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10036238 [exp] 157 / 9e-42 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103300 [exp] 577 / 0 AT2G17670 528 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G271400 [exp] 184 / 7e-52 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 180 / 2e-50 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 179 / 4e-50 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 179 / 6e-50 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 177 / 2e-49 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 173 / 5e-48 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 175 / 1e-47 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 172 / 1e-47 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 171 / 3e-47 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10028379 pacid=23166150 polypeptide=Lus10028379 locus=Lus10028379.g ID=Lus10028379.BGIv1.0 annot-version=v1.0 ATGGGGAAAATCCCGCCATCGTTTCGTTCAGCAGTACCATCATCATCAGCACTGATCAAAAGTGCTCACGAATCTCAATCTATCTCCGACCAGCCTCGTC AATTTCTCAAGAAAGCCATCAAGCGGAAGCCCACAAGGGCTTCGGCAGAACAAGATTCAGCTCGACGGCAGCACCATAAACCATTGGTAAACTCACCGGA CCTCAATGAAGCCAAACGCCTCTTCAATTCCCTCGTCGCCACCGCCCGCGCCCCGCTGGAGCTCCAATTCAACAACGCATTTCTGCAATCCTACGCCTCC ATCTCCACTCCCGACAAGTCAATCGCACTTCTCCAGCACATGTTCAAAACCCTACCTTCCTTCTCCCCTGACCGCTCCACTTTCCACGTCTTACTTCCGC ACGGTTCCGCTTCTCCGGACTCCTCCCTCGCTCTCGCCTCCGTTCGGCAGATGCTCAATGTAATGGTCAACAGTGGCTTCAGCCCTAATCAAGTCACCGT CGACATTGCGGTCCGGTCACTCTGCGCAGCCGGACACGTGGACGAGGCAATCGAATTGGTAAAGGAACTTTCGTCGAAGCATTGTAAGCCTGATTCTTAC ACCTACAATTTTATCATCAAGTCCCTTTGCAAGACCAGGGCTTTGAGCTCGGTATATGAATTTATTAAAGAATTCAGAAATTCTTTTGGGGTGGAGCCTG ATGTTGTTTCCTTCACTATATTGATCGATAACGTTTGTAATTCCAAGAATCTGAGGGAGGCTGCCAAGTTGGTGGGTGTTCTGGAAGCATTTGGGCATAA GCCTGACTGTTTTGTGTACAATACAATTATGAAAGGTTTCTGTATGTTGAGTAAAGGGAGTGAGGCTATTGGGCTCTATAATCAGATGAAGGAGGAAGGT GTGGAGCCTGATATGATCACTTATAATACCTTGATTTTTGGGCTGTCGAAATCTGGGAGAGTGAGTGAAGCTAGGAAGTATTTGAAAGTCATGGTGGAAG CAGGTTATCTTCCTGATACTATTACCTACACATCATTGATGAATGGTTTATGCAGAGAAAGGAATGTAATGGGTGCAATGAAATTGTTAGAGGATATGAA GGAAAACGGTTGTGCTCCAAATGCGTGCACGTACAATACTTTGCTGCACGGGTTATGCAAGGGGAGAATGTTGGAGAAGGGAATTAAATTGTACGGGTTG ATGAAAGAGGAAGGTAAGGTTGCAGAGGCTTACGAGGTGTTCGATTATGCTGTGGAGAGTAAGAGCCTGACTGATGTTGCTGCTTATACATCTTTGGAGA CTACCCTGAAATGGCTGAAGAAAGCTAGAGAGCAAGGCCTCGCTGTCTGA
AA sequence Show only first row Show all	>Lus10028379 pacid=23166150 polypeptide=Lus10028379 locus=Lus10028379.g ID=Lus10028379.BGIv1.0 annot-version=v1.0 MGKIPPSFRSAVPSSSALIKSAHESQSISDQPRQFLKKAIKRKPTRASAEQDSARRQHHKPLVNSPDLNEAKRLFNSLVATARAPLELQFNNAFLQSYAS ISTPDKSIALLQHMFKTLPSFSPDRSTFHVLLPHGSASPDSSLALASVRQMLNVMVNSGFSPNQVTVDIAVRSLCAAGHVDEAIELVKELSSKHCKPDSY TYNFIIKSLCKTRALSSVYEFIKEFRNSFGVEPDVVSFTILIDNVCNSKNLREAAKLVGVLEAFGHKPDCFVYNTIMKGFCMLSKGSEAIGLYNQMKEEG VEPDMITYNTLIFGLSKSGRVSEARKYLKVMVEAGYLPDTITYTSLMNGLCRERNVMGAMKLLEDMKENGCAPNACTYNTLLHGLCKGRMLEKGIKLYGL MKEEGKVAEAYEVFDYAVESKSLTDVAAYTSLETTLKWLKKAREQGLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	0	1
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	1.0	0.9576
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	1.4	0.9388
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	3.0	0.9353
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	4.9	0.9219
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10021645 [exp]	5.5	0.8968
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	7.9	0.9106
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	8.4	0.9271
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	8.5	0.9284
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10002951 [exp]	8.7	0.8847
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030222 [exp]	9.8	0.8798

Compare expression of checked genes

Lus10028379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.