Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35680 127 / 1e-33 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 115 / 3e-30 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 106 / 3e-27 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51410 105 / 9e-27 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35690 101 / 3e-25 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 100 / 1e-24 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 97 / 1e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 97 / 1e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 95 / 6e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 82 / 4e-18 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041833 [exp] 468 / 1e-168 AT4G35680 130 / 1e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 121 / 1e-32 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 119 / 5e-32 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 113 / 6e-30 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 112 / 1e-29 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 112 / 3e-29 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 111 / 4e-29 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 111 / 6e-29 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 111 / 6e-29 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103400 [exp] 232 / 2e-75 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1) Potri.007G059700 [exp] 220 / 1e-70 AT4G35660 117 / 7e-31 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 125 / 4e-34 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 115 / 4e-30 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 114 / 4e-30 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012100 [exp] 114 / 5e-30 AT2G17080 139 / 1e-39 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 107 / 2e-27 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 107 / 3e-27 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 104 / 2e-26 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 103 / 5e-26 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10028380 pacid=23166085 polypeptide=Lus10028380 locus=Lus10028380.g ID=Lus10028380.BGIv1.0 annot-version=v1.0 ATGGCAATCTATACATACATTGCACCAGTAAGGTCAATCAGCCTACCAAATTCCAGAATCCACCCCACTTCCCTCAAATTCCAATCCACACTCACCAAGC TCAAATCATGGGAATCGTCATCGTGTTCAACCTCGCAAACACGACAACCTATTCAAGGACACGACATCGAAACAGGATTGACCAGGCTCGTGGAGTTGTT CCATTCAGCCGAACAACTCCTCCAATCTCCCCTAGCCAGGAGCTCATTACAACACCACCATCAAGAAGTAGAAATTGCCTTGGAGGGATCGGTGAGACTG CTAGATGTTTGCAATATGGCCAAAGAGTTGATCCAAGCAATGAAGGAGCATGTCAATGGACTACAATCGGCATTGAGGAGACGGGGAAATTCCAGCAGCA TGCATGAGAACATCCAAGCTTACTTTACTTTCAGAAAGAAGGCCAGGAAGTCTATGTCCACGTCGCTCAGACTGCTTTCGAAAAAGATATCCCACCGTGA TAACAACTTGGTCATTCAGTCAACTAGGGAAGCGAGCAACATTGCAGCTTCGGTGTTTGAATCTCTTTTCATGTTCTTATCGTCGCCTAACGGTAGGGGA TCATGGGCGGTGATAAAGTCGAAGCTGGTTCGATCTGGGGAACCGGTGAACAACGAGGTTGGGAGTGTGGATGTTGGTTTGTGTTCGGTTATGAAGTTTG ATGCGAAGGAAGTGCAAAGGAGGTTGGAGGTTCTTGATGGATGTATTCAAGGCATGGAAGCTAAGTTGGATTGCGTGTTTCGATGCTTAATTAAGAATCG AGTTTCGTTACTCAATCTCGTTACTACCTTATGA
AA sequence Show only first row Show all	>Lus10028380 pacid=23166085 polypeptide=Lus10028380 locus=Lus10028380.g ID=Lus10028380.BGIv1.0 annot-version=v1.0 MAIYTYIAPVRSISLPNSRIHPTSLKFQSTLTKLKSWESSSCSTSQTRQPIQGHDIETGLTRLVELFHSAEQLLQSPLARSSLQHHHQEVEIALEGSVRL LDVCNMAKELIQAMKEHVNGLQSALRRRGNSSSMHENIQAYFTFRKKARKSMSTSLRLLSKKISHRDNNLVIQSTREASNIAASVFESLFMFLSSPNGRG SWAVIKSKLVRSGEPVNNEVGSVDVGLCSVMKFDAKEVQRRLEVLDGCIQGMEAKLDCVFRCLIKNRVSLLNLVTTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35680			Arabidopsis protein of unknown...		Lus10028380 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	15.3	0.8678
AT1G22430			GroES-like zinc-binding dehydr...		Lus10005656 [exp]	18.1	0.8777
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10015184 [exp]	18.8	0.8418
					Lus10005655 [exp]	32.4	0.8616
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	45.0	0.8291
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10013774 [exp]	46.0	0.8362
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	47.6	0.8401
AT1G14550			Peroxidase superfamily protein...		Lus10009898 [exp]	48.5	0.8526
AT4G12545			Bifunctional inhibitor/lipid-t...		Lus10024624 [exp]	94.3	0.8182
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	102.5	0.8160

Compare expression of checked genes

Lus10028380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.