Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35690 157 / 3e-46 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 143 / 7e-41 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 135 / 4e-38 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 135 / 7e-38 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 123 / 2e-33 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 119 / 7e-32 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 115 / 9e-31 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 108 / 2e-27 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 99 / 4e-23 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 88 / 6e-20 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041834 [exp] 269 / 8e-91 AT4G35690 140 / 1e-40 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 142 / 1e-40 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 141 / 4e-40 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 135 / 3e-38 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 131 / 1e-36 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 130 / 4e-36 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025120 [exp] 130 / 5e-36 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 127 / 5e-35 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 124 / 1e-33 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103700 [exp] 222 / 8e-71 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 206 / 4e-65 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 171 / 3e-51 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 151 / 7e-44 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 150 / 2e-43 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 138 / 5e-39 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 138 / 7e-39 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 138 / 9e-39 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182700 [exp] 135 / 6e-38 AT2G17080 200 / 2e-63 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 132 / 9e-37 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF03087 [flax] [poplar] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Lus10028381 pacid=23166179 polypeptide=Lus10028381 locus=Lus10028381.g ID=Lus10028381.BGIv1.0 annot-version=v1.0 ATGGCAGCCAAATTCCAAACCAGATCCGTCAGCTTACCTTCACGATCCCACCCAACCACGGTCAAGATCGACGAGGAGCTCAACAAGCTCAGAGCATTCA ACGACGCCGTGGCATCTACATCGGGATCTTCTTCCTCGATCTGCAACGCACTTTCAGGTTTGGAAGAGGTGTACAACTGTTTGGAGGAGCTTCTCAACAT GTCCTCGGCGCAAGAAGCTCTGGCTCGCAGCTTAAACGGGAAATGCCTTGACCAATTCATGGACGGATCGGTGAAGCTTCTTGACACGTGTGAGGTTTCC AAAGACGTGATGTCCAAATTGAAAGAGGAAGTCGCCGCTCTTCAGTCTGCAATACGAAGGAGGAGGAATAAAGGAAAGAGTTTCGAATCCGAATTCGAAT CCTCTGTTTCGAGATACGTCTCCTTGAGGAAGAAGGCGAGGAAGGATGTGAAGAAATTGGCTGCTACTTTGAAACAGATGGATAACGGGAAGGCGATTCG TCAGATTGATGGCGAGGAGGATGCGTTCGTTCGGGTGGTTAGGGAAGTGAACGCGGTGAGCGGCGGCGTTCTGCAGTCGGTGCTAGGGTTTGTTTCGGCG CCGGTGGTGAAGCAGGGGAAACAGGGGAAGTGGGGGGTTGTGTGTAAGATTGTGATGGGGAAAACGACGACGTCGTCGGCGGCGGTGGGGTGCGAAGAGA ATGTGAACGAGATTAAAAGTGCAGACGCTGCTGCGTTGTCGTTTTACGACGATGAAAAGAAGGAGTTTGTTCAGAGGGAGCTGTTGGGAGATGTGGAGGG GAAGTTTGAAGATGTTGAGAAGAGGTTGGAGAGTTTGTTCAGGAAGATGATCAAATCAAGAGCGTCTCTGTTGAACATTCTGTCTCAGTAA
AA sequence Show only first row Show all	>Lus10028381 pacid=23166179 polypeptide=Lus10028381 locus=Lus10028381.g ID=Lus10028381.BGIv1.0 annot-version=v1.0 MAAKFQTRSVSLPSRSHPTTVKIDEELNKLRAFNDAVASTSGSSSSICNALSGLEEVYNCLEELLNMSSAQEALARSLNGKCLDQFMDGSVKLLDTCEVS KDVMSKLKEEVAALQSAIRRRRNKGKSFESEFESSVSRYVSLRKKARKDVKKLAATLKQMDNGKAIRQIDGEEDAFVRVVREVNAVSGGVLQSVLGFVSA PVVKQGKQGKWGVVCKIVMGKTTTSSAAVGCEENVNEIKSADAAALSFYDDEKKEFVQRELLGDVEGKFEDVEKRLESLFRKMIKSRASLLNILSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35690			Arabidopsis protein of unknown...		Lus10028381 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	13.2	0.8613
AT4G21620			glycine-rich protein (.1.2)		Lus10011230 [exp]	24.3	0.8318
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	26.7	0.8476
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	27.9	0.8192
					Lus10006286 [exp]	31.9	0.8000
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10024605 [exp]	33.7	0.7899
AT1G05675			UDP-Glycosyltransferase superf...		Lus10039041 [exp]	39.2	0.7835
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	41.6	0.8363
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10033451 [exp]	47.4	0.8303
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	58.8	0.8199

Compare expression of checked genes

Lus10028381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.